Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0040.Seq
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 134 3e-33
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 134 3e-33
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 0.36
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 28 0.48
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 0.83
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 1.5
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 3.4
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 24 5.9
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 24 7.8
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 24 7.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 24 7.8
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 24 7.8
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 24 7.8
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 134 bits (325), Expect = 3e-33
Identities = 65/113 (57%), Positives = 78/113 (69%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GN
Sbjct: 5 RDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHY 341
FSWGSE ++KTRII V Y+ SNN L++ + WYE+HY
Sbjct: 65 FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHY 117
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 134 bits (325), Expect = 3e-33
Identities = 65/113 (57%), Positives = 78/113 (69%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GN
Sbjct: 5 RDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHY 341
FSWGSE ++KTRII V Y+ SNN L++ + WYE+HY
Sbjct: 65 FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHY 117
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 28.3 bits (60), Expect = 0.36
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 176
RD +K + G K+ + EL +N + Q+ + S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 177 GNFSWGSECSTRKTRI 224
G+ E + K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.9 bits (59), Expect = 0.48
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 6 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 167
+ W K T K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 32 EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 0.83
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = +3
Query: 6 DHWHKRRATGGKRAPIRKKRKY-----ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 170
D W +A G +PIR+ ++Y + +PA R H R K R + +
Sbjct: 758 DEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKFR---DNYHKQNKRNREAKERGIGI 814
Query: 171 DTGNFSWGSECSTRKTRIIDVVYNASNN 254
N S RK R + A NN
Sbjct: 815 KV-NSELKSAVEIRKARELKEKRLAKNN 841
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 1.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 259 QLLLDALYTTSMIRVLRVEHSDPQEKLPVSRR 164
Q L+ + T S +V R H DP KLP RR
Sbjct: 190 QFNLEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 97 PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 192
P VLS P++ + L + C+W P LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 139 VEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTIIGAY 267
++ T+ CV+ P + +G + ++ P+S +L LT+ G +
Sbjct: 307 LQTAGTILCVFFPYSLIGHKELRFVYPISPIL----LTLAGKF 345
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -3
Query: 135 VNERSGYAEDRA-WCLQRDALTHTSSSCVWAHVSHRWPFAYASDPD 1
V ER +++ W L + + H SC+ HR + P+
Sbjct: 804 VGERVFISDEHGHWSLAKGHIVHIQDSCIEVRTRHRLHIPWLKMPN 849
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 23.8 bits (49), Expect = 7.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 271 DPCQECNXCSRCNSIQAV 324
D C++ CS+C+++Q V
Sbjct: 145 DHCKKMRRCSKCDAMQGV 162
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = -2
Query: 121 WIR*GPSLVFAAGRPNSYFLFLRMGARFPPV 29
++R PS+++A ++ LF+R+ ++PP+
Sbjct: 327 FVRPLPSIIWALFEFSAVALFIRLKMKYPPL 357
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 23.8 bits (49), Expect = 7.8
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -1
Query: 203 TFRSPREVTGVQTQRTVLSISTT*TNGVDTLRTEPGVCSGTP*LILPLL 57
T S R TGVQ Q S T+G T +P P LP L
Sbjct: 590 TVESKRLSTGVQKQSPAASKEIPVTSGSQTTAPKPSPWKSLPPKHLPSL 638
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 7.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 7 ITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLSVS 120
I + E P G V PY++RG+ + GS VS
Sbjct: 223 ILSLYEQDPEGFVNPYSKRGAAALANSENNKGSEAGVS 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,611,934
Number of Sequences: 5004
Number of extensions: 33131
Number of successful extensions: 82
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -