Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0040.Seq
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 131 2e-31
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 130 2e-31
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.081
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230... 30 0.57
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 0.76
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 1.3
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 2.3
04_03_0549 - 17043135-17043351,17043641-17043846 27 3.1
07_01_0556 - 4136000-4136608 27 4.0
03_06_0019 - 31078669-31080081 27 4.0
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 27 4.0
09_02_0401 - 8575886-8575935,8576518-8576617,8576798-8576959,857... 27 5.3
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 27 5.3
03_05_0151 - 21284751-21284800,21285422-21285521,21285702-212858... 27 5.3
08_01_0716 - 6352433-6352730,6352797-6352978 26 7.1
01_02_0048 - 10626467-10627498,10628522-10628617 26 7.1
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 26 9.3
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740... 26 9.3
02_03_0321 - 17683766-17683834,17685085-17685150,17685568-176856... 26 9.3
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836... 26 9.3
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 131 bits (316), Expect = 2e-31
Identities = 66/114 (57%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTG 179
RD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTG
Sbjct: 5 RDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTG 64
Query: 180 NFSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHY 341
N+SWGSE TRKTRI+DVVYNASNN + L + + WY +HY
Sbjct: 65 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 130 bits (315), Expect = 2e-31
Identities = 66/114 (57%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTG 179
RD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTG
Sbjct: 5 RDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTG 64
Query: 180 NFSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHY 341
N+SWGSE TRKTRI+DVVYNASNN + L + + WY +HY
Sbjct: 65 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHY 118
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.081
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 63 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 197
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>05_01_0296 -
2303344-2303395,2303732-2304180,2304287-2304355,
2304539-2306546,2311181-2311425
Length = 940
Score = 29.9 bits (64), Expect = 0.57
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +1
Query: 103 SVLSVSTPFVH-VVEILSTVRCVWTPVTSLGDRNVQLAKP----VSLMLCIMHLTIIGAY 267
++ + T FV+ V+ L T+ +W V LG + + K V+++ + + I+G Y
Sbjct: 28 NIFLLCTAFVYRVMNGLGTLATIWATVVLLGGFSTLVKKQDFWYVTVIAFVQSIGILGGY 87
Query: 268 KDPCQE 285
+DP +
Sbjct: 88 EDPAHQ 93
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 0.76
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 18 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 167
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 18 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 152
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 18 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 152
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 202 VQLAKPVSLMLCIMHLTIIGAYKDPCQECN-XCSR 303
+ L++P I+ L A+ +PC+ECN C R
Sbjct: 549 IPLSQPEGDQSAILSLASASAFAEPCEECNLPCQR 583
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 125
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 322 LPEWSCIYYXNCILDKGLCTHQLLLDAL 239
+P+WS +YY N +DK L ++ AL
Sbjct: 78 VPKWSIVYYLNSKIDKKLYNWSMIGAAL 105
>07_01_0556 - 4136000-4136608
Length = 202
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 75 LGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 185
LG A+T R HS + RGG+T R + DT +F
Sbjct: 166 LGLILASTATWLARRHSAKVRGGSTVIRPVSGDTDDF 202
>03_06_0019 - 31078669-31080081
Length = 470
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 99 WCLQRDALTHTSSSCVWAH 43
WC QR L H S++C +H
Sbjct: 340 WCPQRRVLAHASTACFVSH 358
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 136 VVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTIIGAYKDP 276
+ E+ STV + V L D +V+L + M C+ ++++G K P
Sbjct: 631 ITELPSTVVHLRRLVRLLIDASVKLPDGIGKMECLQEISLVGISKSP 677
>09_02_0401 -
8575886-8575935,8576518-8576617,8576798-8576959,
8577106-8577253,8577436-8577458,8577615-8577685,
8577792-8577878,8578039-8578470,8578574-8579009
Length = 502
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 105 GPQRIHSVRSRGGNTKYRALRLDTGNFS 188
G +R HS+ GG+ Y L TG FS
Sbjct: 177 GSERPHSISIDGGSLSYDQLAAATGGFS 204
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 100 GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIM 243
G + P + VV + + C+W + SLG R Q++K + L ++
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAML 316
>03_05_0151 -
21284751-21284800,21285422-21285521,21285702-21285863,
21286010-21286157,21286286-21286362,21286519-21286589,
21286696-21286782,21286943-21287374,21287478-21287913
Length = 520
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 105 GPQRIHSVRSRGGNTKYRALRLDTGNFS 188
G +R HS+ GG+ Y L TG FS
Sbjct: 177 GSERPHSISIDGGSLSYDQLAAATGGFS 204
>08_01_0716 - 6352433-6352730,6352797-6352978
Length = 159
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 99 RLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 218
RLG R+ RGG ++ +R D + CS+RKT
Sbjct: 14 RLGWGRVQQRNCRGGPCEHVGVRADEQATATAVVCSSRKT 53
>01_02_0048 - 10626467-10627498,10628522-10628617
Length = 375
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 99 WCLQRDALTHTSSSCVWAHVSHRWPFAY 16
+CLQ D T ++CV A +H W F+Y
Sbjct: 131 YCLQSDDDTFVCAACVAA--AHGWRFSY 156
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 219 GFCELNIPIPKRSY-RCPDAAHGT*YFHHVNERSGYA 112
GF + +P P+ RCPD H + HH + G A
Sbjct: 30 GFFNILVPPPQSPRPRCPDHQHHHHHHHHHDAAGGAA 66
>02_05_1022 +
33570664-33570976,33572206-33573440,33573873-33574013,
33574242-33574796,33574914-33575015
Length = 781
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 196 RNVQLAKPVSLMLCIMHLTIIGAYKDPCQE 285
+++ +++P L +C++HL G Y D E
Sbjct: 659 KHMHVSQPTDLNICMLHLGSHGVYADSSGE 688
>02_03_0321 -
17683766-17683834,17685085-17685150,17685568-17685633,
17685827-17685897,17688035-17688053,17688405-17688687,
17688775-17688945,17689060-17689431,17689629-17689669,
17690112-17690365,17691185-17691263,17691390-17691950
Length = 683
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 178 PVSRRSARYLVFPPRERTEWIR*GPSLVFAAG 83
P++ + R + PPR +T+ +R P V AAG
Sbjct: 100 PMAPQPPRQMYVPPRPQTQIVRQVPRTVQAAG 131
>01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,
8367403-8367550,8367630-8367873,8368105-8368407,
8368639-8368851,8368927-8369002,8369533-8369561,
8369610-8369984,8371784-8371927,8374053-8374086
Length = 1546
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = +1
Query: 94 TPGSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTIIGAYKD 273
+P +++V+ FV+ +E++S P T +G + + + L + GAY
Sbjct: 842 SPSPMMNVTYAFVNGIEVISMPDMFNNPATMVGFADQTADVSAAAFQTMYRLNVGGAYIP 901
Query: 274 PCQE 285
P +
Sbjct: 902 PSND 905
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,977,302
Number of Sequences: 37544
Number of extensions: 237300
Number of successful extensions: 667
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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