Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0040.Seq
(347 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 135 9e-33
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 28 2.1
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 28 2.1
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 28 2.1
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 28 2.1
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 28 2.1
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 28 2.1
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 27 4.9
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 26 6.4
U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical pr... 26 6.4
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 26 6.4
AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical... 26 8.5
AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ... 26 8.5
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 135 bits (326), Expect = 9e-33
Identities = 63/115 (54%), Positives = 78/115 (67%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGN 182
RD WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD+GN
Sbjct: 5 RDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGN 64
Query: 183 FSWGSECSTRKTRIIDVVYNASNNNWCVQRPLSRMQLX**MQLHSGSWYESHYTL 347
FSW SE +TRKTRI+D +YNA+NN + L + + WYE+HY L
Sbjct: 65 FSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYAL 119
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 159 ALRLDTGNFSWGSECSTRKTRIIDVVYN 242
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 159 ALRLDTGNFSWGSECSTRKTRIIDVVYN 242
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 159 ALRLDTGNFSWGSECSTRKTRIIDVVYN 242
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 159 ALRLDTGNFSWGSECSTRKTRIIDVVYN 242
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 159 ALRLDTGNFSWGSECSTRKTRIIDVVYN 242
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 159 ALRLDTGNFSWGSECSTRKTRIIDVVYN 242
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +3
Query: 3 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 152
R+ G +R+P R +R+ + P N + P+R + RS ++
Sbjct: 55 RERMENLTLEGKRRSPPRVRREPPMRSPGRNEVMSPERRYGTRSASSRSQ 104
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 316 EW-SCIYYXNCILDKGLCTHQLLLDALYTTS 227
+W +C ++ NC L GLCT + A T++
Sbjct: 111 QWDNCPFFKNCPLSCGLCTGNVTTPATTTST 141
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 118 STPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMH 246
+TP + EI+ST VW V ++ K +S C +H
Sbjct: 528 TTPVIIKEEIISTATKVWKKVDKTSGVSINKNKCLSTQRCDLH 570
>U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical
protein B0218.1a protein.
Length = 572
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 243 HYTQHQ*YGFCELNIPIPKRSYRCPDAAHGT 151
HY + FC+ N+P SY C + GT
Sbjct: 170 HYKKLGLIPFCQTNVPQSLLSYNCSNPLFGT 200
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 61 RGSMS*GVPLQTPGSVLSVSTPFVHVVEILSTVRCVWTP-VTSLGDRNVQLAKP 219
+G+ + GV + TPG++ + +TP V + T TP VT ++LA P
Sbjct: 650 QGTGATGVTMSTPGTMATGTTPMTPTVSVWGTN----TPAVTPASPTTIRLADP 699
>AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical
protein Y66D12A.17 protein.
Length = 830
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 244 ALYTTSMIRVLRVEHSDPQEKL 179
A+Y SM R LR+ H DP+ L
Sbjct: 747 AIYHVSMARCLRLMHKDPRVHL 768
>AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical
protein Y46E12BL.2 protein.
Length = 1334
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 138 GGNTKYRALRLDTGNFSWGSECSTRKTR 221
GGN ++R + F+ GS C + TR
Sbjct: 3 GGNFRHRTSKKGAAKFNSGSACESNPTR 30
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,107,278
Number of Sequences: 27780
Number of extensions: 197513
Number of successful extensions: 561
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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