Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0030.Seq
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   0.42 
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   0.73 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   2.2  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   2.2  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   3.9  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    23   9.0  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    23   9.0  
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    23   9.0  

>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 0.42
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 145 SALPSLIGRRLRHYSLRPQRILLTPP 68
           SAL  L  R L H  ++PQ +LL PP
Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 260 TDRLTPSIKLSSXEXETFSTYRKAFSLRHNATLSSEQVFST 138
           TDR  P   LSS    TF  ++   S   N   SSE  + T
Sbjct: 34  TDRALPDSSLSSLSRSTFQFHKHHLSGNENPQPSSESPYFT 74


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 127 SVMGVLKTCSDDNVALCLKEKALRYVENVS 216
           S MG+LK   DD++ +   ++ LR+    S
Sbjct: 192 SPMGILKNIQDDSMTIVTNKRILRFEPKTS 221


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 195 QSFFLETQCDVVIGA-SFQHSHH*SEDVFVTIRCGHSAYC 79
           ++ FL+   +V +G   F      S   F+  RCG  AYC
Sbjct: 152 ENIFLDKAYNVKLGDFGFSRDSDCSRRTFMNTRCGTVAYC 191


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 186 FLETQCDVVIGASFQHSHH*SEDVFVTIR 100
           +LE Q ++  G      HH S+DVF+ IR
Sbjct: 231 YLELQRNICQGNLSCWDHHYSDDVFLLIR 259


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 157 RSKFSALPSLIGRRLRHYSLRPQRILLTPPGAS 59
           +S+F   P+LI     H +L P++IL   P A+
Sbjct: 2   QSRFLISPTLIRTFAHHANLTPRKILHDLPEAA 34


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 109  DEDVFRSVMGVLKTCSDDNVALCLKEKAL 195
            DED+ R+ +G+  TC   +  L   EK+L
Sbjct: 1159 DEDIKRTTLGLNLTCGTASFFLNKLEKSL 1187


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 127 SVMGVLKTCSDDNVALCLKEKALRY 201
           SV+GV K  SD+ +    ++KAL++
Sbjct: 34  SVLGVEKDASDELIRRAYRKKALQH 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,900
Number of Sequences: 5004
Number of extensions: 19021
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)