Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0030.Seq
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0358 - 4692079-4692567                                           28   2.0  
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532...    27   4.7  
06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268     26   8.3  
02_03_0335 + 17882461-17882527,17882616-17884723                       26   8.3  

>04_01_0358 - 4692079-4692567
          Length = 162

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 178 LKEKALRYVENVSXSXELNLIDGVSLSVKAXLDQPGPXSLYPTSPYP 318
           +KE AL+Y  N+    E N+    S+     LD P P  L  + P P
Sbjct: 26  IKELALKYKINIQEQIEENIKIPKSIISLLPLDPPPPLVLSSSQPAP 72


>04_04_1057 -
           30451759-30452523,30452627-30452701,30453180-30453254,
           30453503-30453591,30454058-30454157,30454244-30454388,
           30454609-30454658,30455033-30455114,30455200-30455282,
           30455360-30455429,30455523-30455632,30455719-30455872,
           30456639-30456796,30457338-30457517
          Length = 711

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 172 MRRCHRSKFSALPSLIGRRLRHYSLRPQRILLTP 71
           +R   +    A+  + G R+ H  L+P+ ILLTP
Sbjct: 218 VRAFSKQILDAMVVMRGARIIHCDLKPENILLTP 251


>06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268
          Length = 583

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 109 HYSLRPQRILLTPPGASWF 53
           H+ LR  R LL PP   W+
Sbjct: 64  HHCLRRSRFLLQPPSEPWY 82


>02_03_0335 + 17882461-17882527,17882616-17884723
          Length = 724

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 178 DTMRRCHRSKFSALPSLIGRRLRHYSLRPQRILLTPPGA 62
           D +R CH    SAL +     +RH  +RP+ ++    G+
Sbjct: 553 DALRCCHDC-LSALAAASSAGIRHGDIRPENVIRVSNGS 590


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,460,885
Number of Sequences: 37544
Number of extensions: 138592
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)