Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0030.Seq
         (329 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.23 
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              27   3.7  
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 27   3.7  
SB_25239| Best HMM Match : PKD (HMM E-Value=5.2)                       27   4.9  

>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +1

Query: 109 DEDVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSXSXELNLIDGVSLSVKAXLDQPGP 288
           D  +   +  V+     D  +  L    L Y+E+ + +    LIDG+ L  K   D+P  
Sbjct: 306 DVRILNEIDDVISLDIFDRDSTILLNAGLHYLESTNFTNYQRLIDGIVLLFKRAKDEPRD 365

Query: 289 XSLYPTSPYPGRI 327
                + P+PG +
Sbjct: 366 LIPGASRPFPGHM 378


>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
 Frame = -2

Query: 157 RSKFSALPSLIGR-RL----RHYSLRPQRILLTPPGA 62
           R++F   PS++ R RL    +  + RP+RI+ +PPGA
Sbjct: 126 RTRFMRTPSVMDRHRLWTLRKEVAFRPRRIIYSPPGA 162


>SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 136 PSLIGRRLRHYSLRPQRILLTPPGASWF 53
           P+  G +LR+ S  PQ + + PP   W+
Sbjct: 4   PNKRGHQLRNLSSNPQGLAIRPPSVLWY 31


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 109 HYSLRPQRILLTPPGASWF*LQFRFPWNRPGSVSG 5
           H ++ P    LT P A W+ +  R  W +PG  +G
Sbjct: 614 HTAMGPDGDKLTLPFAIWYWMNNRDTWEKPGIRNG 648



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 109 HYSLRPQRILLTPPGASWF*LQFRFPWNRPGSVSG 5
           H ++ P    LT P A W+ +  R  W +PG   G
Sbjct: 229 HTAMGPDGDKLTLPFAIWYWMNNRDTWEKPGIRKG 263


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 119 SSDQ*WEC*KLAPMTTSHCVSRKKLCDTWKM 211
           ++D  WE  + A  T   CV  K + DTW +
Sbjct: 431 NTDDLWESFRQASCTRGSCVDVKYIMDTWTL 461


>SB_25239| Best HMM Match : PKD (HMM E-Value=5.2)
          Length = 193

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 134 WEC*KLAPMTTSHCVSRKKLCDTWKM 211
           W+  + A   T  CV  KK+ DTW +
Sbjct: 41  WKVLRNASCATGSCVDVKKMMDTWTL 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,515,398
Number of Sequences: 59808
Number of extensions: 167506
Number of successful extensions: 309
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)