Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0030.Seq
         (329 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   0.74 
DQ182014-1|ABA56306.1|   55|Anopheles gambiae G(alpha)m protein.       22   5.2  
AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dp...    22   5.2  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 146  KLAPMTTSHCVSRKKLCDTWKMSRIL 223
            K+ P+ T H ++R +LC    + ++L
Sbjct: 1081 KVTPLATKHTIARLELCAAHLLGKLL 1106


>DQ182014-1|ABA56306.1|   55|Anopheles gambiae G(alpha)m protein.
          Length = 55

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 155 PMTTSHCVSRKKLC 196
           P  TSH V RK+ C
Sbjct: 11  PRRTSHLVGRKRTC 24


>AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dpp
           protein.
          Length = 474

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 256 SVKAXLDQPGPXSLYPTSPY 315
           S  + +  PGP S  P SPY
Sbjct: 212 SPMSSVSSPGPISSNPQSPY 231


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.312    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,867
Number of Sequences: 2352
Number of extensions: 4922
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 22910151
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)