Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0030.Seq
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    26   7.3  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    26   7.3  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    26   7.3  

>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
           protein F55H12.3 protein.
          Length = 2972

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 127 SVMGVLKTCSDDNVALCLKEKALRYVENV 213
           +V G  K+CS+DNV +  K ++  YV N+
Sbjct: 562 NVQGFRKSCSEDNVQIVSKNQS-TYVTNL 589


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical
           protein K12F2.1 protein.
          Length = 1969

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 157 RSKFSALPSLIGRRLRHYSLRPQRILLTPPGASWF*LQFRFPWNRPGSVSGR 2
           R+ FS    L G  + HY L   R++   PG   + + ++       S+ G+
Sbjct: 252 RTHFSGSGKLAGGDIEHYLLEKSRVVRQAPGERCYHIFYQIMSGNDPSLRGK 303


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain
           3 protein.
          Length = 1969

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 157 RSKFSALPSLIGRRLRHYSLRPQRILLTPPGASWF*LQFRFPWNRPGSVSGR 2
           R+ FS    L G  + HY L   R++   PG   + + ++       S+ G+
Sbjct: 252 RTHFSGSGKLAGGDIEHYLLEKSRVVRQAPGERCYHIFYQIMSGNDPSLRGK 303


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 207 FHVSQSFFLETQCDVVIGASFQHSHH*SEDVFVTI 103
           +H    FF+ + CD++I A+     H    +F+TI
Sbjct: 80  YHFFVPFFVTSNCDLIINATLFKYGHMIALIFMTI 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,849,244
Number of Sequences: 27780
Number of extensions: 113425
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)