Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0028.Seq
         (329 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   4.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   4.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   5.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   5.8  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    20   7.7  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 101 SPSDKGISELVLFHRPRCPSTRKNWCN 181
           +PS++ + EL    R  C     +W N
Sbjct: 295 NPSERVMRELGRIFRAYCRENHASWVN 321


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 222 GGRDEGSDGNRVXLSNEER 278
           GGR  G DG+R     EE+
Sbjct: 93  GGRGGGRDGDRGDGGGEEK 111


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 187  KLAEQAERYDDMAAAMKEVTETGSNLATRRG 279
            KL      Y+D      E+ +T SNLA   G
Sbjct: 1350 KLKGINNEYEDQTEVPVEMRKTVSNLAQTSG 1380


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 187  KLAEQAERYDDMAAAMKEVTETGSNLATRRG 279
            KL      Y+D      E+ +T SNLA   G
Sbjct: 1350 KLKGINNEYEDQTEVPVEMRKTVSNLAQTSG 1380


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 222 GGRDEGSDGN 251
           GG D G DGN
Sbjct: 102 GGEDIGDDGN 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,401
Number of Sequences: 336
Number of extensions: 1355
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)