Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0028.Seq
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 41 4e-05
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 41 4e-05
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 29 0.14
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 28 0.42
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 2.2
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 3.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 24 5.2
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 24 6.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 23 9.0
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 23 9.0
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 9.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 23 9.0
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 41.1 bits (92), Expect = 4e-05
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +1
Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
MS +E V AKLAEQAERY++M MK+V + L+ + + + ARR+
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRA 59
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 41.1 bits (92), Expect = 4e-05
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +1
Query: 154 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
+ +E+ V AKLAEQAERY+ M MK V T L + + + ARR+
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRA 60
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 29.5 bits (63), Expect = 0.14
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 127 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQL 294
I L S D +Q E+Y D AA + ++ +G+++ R+G+ L
Sbjct: 6 IIKLLEQVQSADPNSRIQAELGLRDLEKYHDFAAKLTDIASSGASVPLRQGSLIYL 61
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.9 bits (59), Expect = 0.42
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 44 FSAREXLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLS 208
FS +E ILC L+L+V + ++ S+ + F +PR K N WPN+ S
Sbjct: 39 FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98
Query: 209 DM 214
+
Sbjct: 99 HL 100
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 2.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 98 FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 220
FSP +K + +L LFH + PS+++ V N + SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 3.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 113 KGISELVLFHRPRCPSTRKNWCNVPNW 193
+G+ + L RC +T CNVP W
Sbjct: 694 EGVRKSALSSLWRCATTYYKVCNVPQW 720
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.2 bits (50), Expect = 5.2
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -1
Query: 329 DDRRAHTDILIS----N*KXVPLLVAKXDPVSVTSFIAAAMSSYRSACSANLARCTSSSL 162
DD A T + ++ N VPL VA +P S + +A++ ++ + +L SSSL
Sbjct: 396 DDTNASTAVPVAFTNDNVSNVPLSVADNEPNSTLNLLASSDTAAFEPTAVSLHENPSSSL 455
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 23.8 bits (49), Expect = 6.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 127 ISSLPSSTMSVDKEELVQRAKL 192
I SLP+S + K+E +Q++KL
Sbjct: 329 IESLPASLKQLIKDEYLQKSKL 350
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 231 DEGSDGNRVXLSNEERNLLSVAYKNV 308
DEGSD ++ + ++ LLS+ NV
Sbjct: 344 DEGSDKSQKGIISDSPKLLSIPLNNV 369
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 23.4 bits (48), Expect = 9.0
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +2
Query: 86 VQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLSD 211
V+ + S + I EL P+C + N P W + L D
Sbjct: 78 VKAAYGRSMEEIIELKGVELPKCLPKHARYHNAPKWRSSLMD 119
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 278 PLLVAKXDPVSVTSFIAAAMSSYRSACSANLARCTSSSLST 156
PL + + +SFI + +SS S++ A TSSS +T
Sbjct: 65 PLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSAT 105
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/56 (23%), Positives = 21/56 (37%)
Frame = +2
Query: 44 FSAREXLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLSD 211
F + +I + I + PS + + P P+T W V N +SD
Sbjct: 2227 FQSCSPIIRICKKVAHIQYDPSKDEVGAFAADYTPLGPNTFLAWGRVDNTVQLISD 2282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,474
Number of Sequences: 5004
Number of extensions: 22503
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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