Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0028.Seq
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 45 1e-05
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 39 0.001
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 38 0.001
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 38 0.002
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 38 0.003
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 37 0.004
03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228 31 0.17
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 31 0.29
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 29 1.2
05_03_0513 + 14919136-14920881 27 3.6
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 27 4.7
07_03_1043 + 23506148-23506226,23506344-23506693,23506782-23507075 27 4.7
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 27 4.7
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 27 4.7
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961... 27 4.7
07_01_0775 + 5976883-5978109 26 8.3
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 26 8.3
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +1
Query: 160 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
++E++V+ AKLAEQAERYDDM MK + +++ F + + ++ ARR+
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMKTLARMDVDMSAEERLLFSVGFKKTIGARRA 58
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +1
Query: 142 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 252
S+ + +EE V AKLAEQAERY++M M++V +T
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEKVAKT 38
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 261 LSNEERNLLSVAYKNV 308
L+ EERNLLSVAYKNV
Sbjct: 44 LTVEERNLLSVAYKNV 59
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1
Query: 142 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 252
S + +EE V AKLAEQAERY++M M++V +T
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEKVAKT 256
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 261 LSNEERNLLSVAYKNV 308
L+ EERNLLSVAYKNV
Sbjct: 262 LTVEERNLLSVAYKNV 277
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 145 STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET 252
S +EE V AKLAEQAERY++M M++V +T
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKT 37
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 261 LSNEERNLLSVAYKNV 308
L+ EERNLLSVAYKNV
Sbjct: 43 LTVEERNLLSVAYKNV 58
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 37.5 bits (83), Expect = 0.003
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +1
Query: 157 VDKEELVQRAKLAEQAERYDDMAAAMKEVTET 252
+ +EE V AKLAEQAERY++M M++V +T
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEKVAKT 32
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 261 LSNEERNLLSVAYKNV 308
L+ EERNLLSVAYKNV
Sbjct: 38 LTVEERNLLSVAYKNV 53
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +1
Query: 163 KEELVQRAKLAEQAERYDDMAAAMKEV 243
+EE+V AKLAEQAERY++M M++V
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEKV 36
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +3
Query: 261 LSNEERNLLSVAYKNV 308
L+ EERNLLSVAYKNV
Sbjct: 48 LTVEERNLLSVAYKNV 63
>03_02_0670 - 10303538-10303930,10304349-10305444,10305831-10306228
Length = 628
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 133 SLPSSTMSV--DKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRM 306
+LP+S D ++++ A+L EQA D A +++EV + GT FQL
Sbjct: 129 ALPNSYAQAGFDMKDVLLHARLVEQAAGEDQPAVSIEEVPGSNGRGGANEGTVFQLTFAC 188
Query: 307 S 309
S
Sbjct: 189 S 189
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 30.7 bits (66), Expect = 0.29
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 237 GSDGNRVXLSNEERNLLSVAYKNV 308
G+ G L+ EERNLLSVAYKNV
Sbjct: 14 GASGGE-ELTVEERNLLSVAYKNV 36
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 261 LSNEERNLLSVAYKNV 308
L+ EERNLLSV YKN+
Sbjct: 15 LTKEERNLLSVGYKNL 30
>05_03_0513 + 14919136-14920881
Length = 581
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 254 PVSVTSFIAAAMSSYRSACSANLARCTSSSLSTDIVDDG 138
PVSV F + SS + S++ + +SSS +D DDG
Sbjct: 402 PVSVNKFPDSPRSSSSGSSSSSSSGSSSSSSESDSDDDG 440
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -1
Query: 281 VPLLVAKXDPVSVTSFIAAAMSSYRS----ACSANLARCTSSSLSTD 153
+PLL A P+S++ +AAA ++ R C+A +SSS S D
Sbjct: 408 MPLLPASPPPLSLSRSLAAAAAASRRGRAVTCAAARGAASSSSASFD 454
>07_03_1043 + 23506148-23506226,23506344-23506693,23506782-23507075
Length = 240
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 156 RRQGRTGATCQIGRTS*AI*RHGGRDEGSDGNRVXLSNEERNLLSVAYKNVRMCPT 323
RR+ R GA C G GG +G D + LS+E+ +L ++++ R T
Sbjct: 37 RRRRRRGARCVGGGGG------GGEVDGGDPKKRRLSDEQVEMLELSFREERKLET 86
>04_04_0751 -
27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 281 VPLLVAKXDPVSVTSFIAAAMSSYRSACSANLARCTSSSLSTDIVDDGRELI 126
+P L +P T ++ R AC+ N A C+SS L ++D +L+
Sbjct: 165 LPYLPCGDEPSPRTRMAVGIHATLR-ACTRNRAMCSSSGLLPVLLDSAEKLL 215
>02_05_0220 -
26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 281 VPLLVAKXDPVSVTSFIAAAMSSYRSACSANLARCTSSSLSTDIVDDGREL 129
+P + +P S + +A A+ + S+C+ N CTSS L ++D +L
Sbjct: 157 LPYIPCGVEP-SPRTRMARALLATLSSCTRNRTMCTSSGLLAILLDAAEKL 206
>02_04_0347 +
22193708-22193720,22194317-22194390,22195388-22196132,
22196203-22196417,22196505-22196786,22196870-22196998,
22197088-22197267,22197538-22197645,22197888-22198094
Length = 650
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 91 NTFFPFRQGHQ*ISSL 138
+T+FPF+QGH IS+L
Sbjct: 311 STYFPFKQGHLAISTL 326
>07_01_0775 + 5976883-5978109
Length = 408
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 228 GRHVVISLSLFGQFGTLHQFFLVDGHRGRWKRTNSLMPLSEGE 100
GR + IS+ FGT F D R W R M EG+
Sbjct: 228 GRTIFISIEDCVTFGTRKSTFSFDAGRLEWTRVGDWMLPFEGQ 270
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 184 HVAPVLPCRRTSWTMEEN*FTDAL 113
HV+ +LPC R S + ++ F+D+L
Sbjct: 303 HVSGILPCPRESQLIPDHHFSDSL 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,853,366
Number of Sequences: 37544
Number of extensions: 166546
Number of successful extensions: 514
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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