Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0028.Seq
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    67   3e-12
Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical pr...    67   3e-12
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    67   3e-12
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    67   3e-12
Z70754-3|CAA94773.1|  293|Caenorhabditis elegans Hypothetical pr...    29   0.60 
Z68216-1|CAA92459.1|  493|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    27   3.2  
U56966-1|AAA98717.1|  208|Caenorhabditis elegans Ets class trans...    26   5.5  
AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid tr...    26   5.5  
Z81118-2|CAB03324.2|  318|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alp...    26   7.3  
AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical ...    26   7.3  
AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical ...    26   7.3  
Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 36/59 (61%), Positives = 40/59 (67%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           MS   EELVQRAKLAEQAERYDDMAAAMK+VTE G  L+        +  +  V ARRS
Sbjct: 1   MSDTVEELVQRAKLAEQAERYDDMAAAMKKVTEQGQELSNEERNLLSVAYKNVVGARRS 59


>Z66564-5|CAC42300.2|  198|Caenorhabditis elegans Hypothetical
           protein F52D10.3b protein.
          Length = 198

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 35/59 (59%), Positives = 41/59 (69%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           MS  KEELV RAKLAEQAERYDDMAA+MK+VTE G+ L+        +  +  V ARRS
Sbjct: 1   MSDGKEELVNRAKLAEQAERYDDMAASMKKVTELGAELSNEERNLLSVAYKNVVGARRS 59


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 35/59 (59%), Positives = 41/59 (69%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           MS  KEELV RAKLAEQAERYDDMAA+MK+VTE G+ L+        +  +  V ARRS
Sbjct: 1   MSDGKEELVNRAKLAEQAERYDDMAASMKKVTELGAELSNEERNLLSVAYKNVVGARRS 59


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 36/59 (61%), Positives = 40/59 (67%)
 Frame = +1

Query: 151 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRMSVCARRS 327
           MS   EELVQRAKLAEQAERYDDMAAAMK+VTE G  L+        +  +  V ARRS
Sbjct: 1   MSDTVEELVQRAKLAEQAERYDDMAAAMKKVTEQGQELSNEERNLLSVAYKNVVGARRS 59


>Z70754-3|CAA94773.1|  293|Caenorhabditis elegans Hypothetical
           protein F58E6.3 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -1

Query: 269 VAKXDPVSVTSFIAAA----MSSYRSACSANLARCTSSSLSTDIVDDGRELIH*CPCRKG 102
           + K  PVS T++   A    M  + + C A+   C   +   D+ D+  + ++ C C+ G
Sbjct: 187 ICKTCPVSTTTYQQGANTAKMCEWTNQCKASTHNCHWLAACIDLPDENHKKMYSCKCKPG 246


>Z68216-1|CAA92459.1|  493|Caenorhabditis elegans Hypothetical
           protein F27C8.1 protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 71  CLNL-LVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 220
           C+ L L+ +  +P D GI  L++            W N P W N+  D +T
Sbjct: 427 CIALVLIPMVAAPRDTGIGLLIMLSAVPVYGIFIGWKNKPKWFNEFIDSST 477


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 86  VQIHFSPSDKGISELVLFHRPRCPSTRKN 172
           +Q+H + SD+ ++ ++    P  P TR+N
Sbjct: 274 LQVHLNESDRDVTRVLWVKNPDLPPTREN 302


>U56966-1|AAA98717.1|  208|Caenorhabditis elegans Ets class
           transcription factorprotein 5 protein.
          Length = 208

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 254 PVSVTSFIAAAMSSYRSACSANLARCTSSSLSTDIV 147
           P+ VTS ++ +MSSY S  S+     TSS+ S  I+
Sbjct: 154 PIGVTSRLSTSMSSYHSILSS-----TSSTSSNQII 184


>AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid
           transporter protein 3 protein.
          Length = 493

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = +2

Query: 8   PSGPAAVKASISFSAREXLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVP 187
           P  P AVKA I F     +   L +LV +  +P D  I  L++            W   P
Sbjct: 407 PDAPRAVKAPIVFPIIFFIGCVLLVLVPVLGNPKDTAIGILIMLSGVPVYLIFIAWKGKP 466

Query: 188 NWPNKLSDMTT 220
              + L+D  T
Sbjct: 467 KCIDSLTDSVT 477


>Z81118-2|CAB03324.2|  318|Caenorhabditis elegans Hypothetical
           protein T10G3.1 protein.
          Length = 318

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 164 RKNWCNVPNWPN 199
           RK +C V NWPN
Sbjct: 284 RKTYCQVDNWPN 295


>Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical
           protein B0365.3 protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 142 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRM-SVCA 318
           +ST+  DK   + + ++      YD+      + TET ++   R G  F+ L+R+ S+C 
Sbjct: 348 TSTICSDKTGTLTQNRMTVAHMWYDETIHEC-DTTETQTSQEKRTGASFEALVRIASLCN 406

Query: 319 R 321
           R
Sbjct: 407 R 407


>U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alpha
           subunit protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 142 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGSNLATRRGTXFQLLIRM-SVCA 318
           +ST+  DK   + + ++      YD+      + TET ++   R G  F+ L+R+ S+C 
Sbjct: 348 TSTICSDKTGTLTQNRMTVAHMWYDETIHEC-DTTETQTSQEKRTGASFEALVRIASLCN 406

Query: 319 R 321
           R
Sbjct: 407 R 407


>AL032655-7|CAH60798.1|  329|Caenorhabditis elegans Hypothetical
           protein Y6B3B.12 protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 81  CWFKYIFPLPTRASVN*FSSIVHDVRRQGRTG 176
           C F +  PL  R SV  F+      RRQG+ G
Sbjct: 277 CGFTFADPLAVRKSVEEFNQKKIGSRRQGKVG 308


>AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical
           protein F31F4.17 protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 113 CRKGKNVFEPANLSTISXFLLR*TIYWL 30
           C+ G N+FE A+L  +S +L R  ++++
Sbjct: 92  CQLGNNIFELASLYGLSKYLNRTPVFFI 119


>Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical
           protein E01B7.1 protein.
          Length = 410

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -1

Query: 329 DDRRAHTDILISN*-KXVPLLVAKXDPVSVTSFIAAAMSSYRSACSANLARCTSSSLSTD 153
           D R+  +D +  N  + + ++    D +  +   A+  ++      A LAR ++S     
Sbjct: 172 DIRQNQSDAIFYNRSEMITVIQVPYDMIDSSLTFASFRTNLAVTQRALLARLSTSDYVVL 231

Query: 152 IVDDGRELIH*CPCRKGKNVF 90
           + DDG EL++  P  K K  F
Sbjct: 232 MDDDGPELVNTSPLPKSKMSF 252


>Z78413-8|CAB01665.2|  541|Caenorhabditis elegans Hypothetical
           protein T01C3.8 protein.
          Length = 541

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 205 QLVRPIWHVAPVLPCRRTSWTMEEN*FTDALVGR 104
           +LVRPI  +A +LP + +  T+E N  + A+V +
Sbjct: 301 KLVRPISEIASLLPTQES--TLENNNISPAIVSQ 332


>AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical
           protein F02E11.5 protein.
          Length = 207

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 219 VVISLSLFGQFGTLHQFFLVDGH 151
           VV S+S++GQF    Q  +VD H
Sbjct: 9   VVASVSVYGQFSKAGQKAIVDAH 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,196,168
Number of Sequences: 27780
Number of extensions: 132125
Number of successful extensions: 326
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)