Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0027.Seq
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.092
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   1.1  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   2.6  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    24   3.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   3.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    23   6.1  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   6.1  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    23   6.1  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.092
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = -2

Query: 203 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 51
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 158 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 51
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 219 NMISVLFCWFSELRGND 169
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -2

Query: 212 SRFYFVGFQNSEVMINRDNWGHSYCDVRGEILGS 111
           S+  F+G  ++   I++D +      +RG ++ S
Sbjct: 865 SKLSFIGSNHTRYRIDKDEFSSGIASIRGTLMSS 898


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 6/20 (30%), Positives = 17/20 (85%)
 Frame = +3

Query: 108 RRSKNFTSNVAIRMPPVIPI 167
           + SK++ +N ++++PP++P+
Sbjct: 558 KTSKSYKTNDSLKVPPLVPL 577


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 191 FQNSEVMINRDNWGHSYCDVRGEI 120
           F  +E +++   +  SYC VRG I
Sbjct: 267 FVETETILDSSKYCVSYCQVRGSI 290


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 127 VKFLDRRKTNISESICQRCFHQSRTKVRGSKAI 29
           +K+ +R + +    +C +C+    TKV+  +AI
Sbjct: 158 LKYSNRLQASNDTGVCVKCYGGMETKVQVCQAI 190


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = -3

Query: 115 DRRKTNISESICQRCFHQSRTKVRGSKA--IRY 23
           +  + N    IC  CFH +     G KA  +RY
Sbjct: 190 ENSENNREALICSHCFHHNGLASYGEKASDVRY 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,053,718
Number of Sequences: 5004
Number of extensions: 17376
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)