Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0027.Seq
(279 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-12
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-10
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-10
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-10
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-10
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-10
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-05
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-05
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-05
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-05
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 1.8
SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 26 5.4
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19) 26 5.4
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3) 25 7.1
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4) 25 9.4
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 25 9.4
SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = -1
Query: 120 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
SWI RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 105 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 105 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 105 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -1
Query: 105 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 58.4 bits (135), Expect = 8e-10
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -1
Query: 102 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -1
Query: 102 RTSAKAFAKGVFINQERKLEVRRRLDT 22
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 1e-06
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = -1
Query: 105 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
R+T+ ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 127 VKFLDRRKTNISESICQRCFHQSRTKV 47
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = -1
Query: 105 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
R+T+ ++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.9 bits (74), Expect = 0.020
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 127 VKFLDRRKTNISESICQRCFHQSRTKV 47
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 8e-05
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 105 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 124 KFLDRRKTNISESICQRCFHQSRTKV 47
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 8e-05
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 105 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 7e-04
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 127 VKFLDRRKTNISESICQRCFHQSRTKV 47
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 8e-05
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -1
Query: 105 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 7e-04
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -3
Query: 127 VKFLDRRKTNISESICQRCFHQSRTKV 47
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 188 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 78
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 109 DDPRISPLTSQYEC 150
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
>SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 158 NWGHSYCDVRGEILGSSQ 105
N+GHSY +RG I G +Q
Sbjct: 635 NFGHSYVQIRGYIGGEAQ 652
>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
Length = 575
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 213 SYSIIPCTKYSSSILARFEH 272
+Y IPCT Y+ ++ +RF H
Sbjct: 127 TYRGIPCTNYTENLWSRFWH 146
>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
Length = 605
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 213 SYSIIPCTKYSSSILARFEH 272
+Y IPCT Y+ ++ +RF H
Sbjct: 58 TYRGIPCTNYTENLWSRFWH 77
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 97 CSSCDDPRISPLTSQYECPQLS 162
CS CD+P I S Y+ P S
Sbjct: 344 CSECDEPHIYAAPSNYQEPPSS 365
>SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3)
Length = 396
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 146 SYCDVRGEILGSSQDEHQRKHLPKVFSSIKNES*RFEG 33
SY +V E S++ + LPK + KN+S F G
Sbjct: 36 SYLEVEKEKTDSTEHRKKLGALPKTITHTKNQSPSFSG 73
>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
Length = 303
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 115 DRRKTNISESICQRCFHQSRTKVRGSKAIRYRPSSNR 5
DRR +N C RC + R S+A+ R + R
Sbjct: 198 DRRGSNCKVPTCYRCRNGKRGATGASRAVYRRRNGKR 234
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 164 RDNWGHSYCDVRGEILGSSQDEHQRKHL 81
++++ S D GE L + EHQRKH+
Sbjct: 1995 KEDYNSSSSDDMGEPLKLDKFEHQRKHV 2022
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 67 ENTFGKCFR*CSSCDDPRISPLTSQYECPQLSLLI 171
E T K R CD+ RIS LT YE L L I
Sbjct: 1125 EETRAKLQRIVKECDE-RISILTQNYEAQILQLTI 1158
>SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -2
Query: 227 NNRI*SRFYFVGFQNSEVMINRDNWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 51
NN + FY + EV+ N S D+ + H ++ LPK ++ +KNE
Sbjct: 288 NNARKTTFYMSAVEKPEVLQRLPN-DKSPLDIYIIAFDGTSHAHFQRMLPKTYAFLKNE 345
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,558,369
Number of Sequences: 59808
Number of extensions: 124261
Number of successful extensions: 305
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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