Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0027.Seq
         (279 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          23   2.2  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            21   6.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            21   6.6  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         21   8.7  

>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 120 SWIVARRTSAKAFAKGVFINQERKLEVRR 34
           +W++  RT      KG    Q +KLE R+
Sbjct: 23  TWVMVYRTEKYQKLKGEVEKQSKKLEKRK 51


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 250 LLEYFVHGIIEYD 212
           L+ +F HG + YD
Sbjct: 852 LIHFFTHGFLTYD 864


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 250 LLEYFVHGIIEYD 212
           L+ +F HG + YD
Sbjct: 853 LIHFFTHGFLTYD 865


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 122 ILGSSQDEHQRKHLPKV 72
           +L   Q  HQ  HLP V
Sbjct: 115 LLNHHQHHHQHPHLPHV 131


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,296
Number of Sequences: 2352
Number of extensions: 3671
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 54
effective length of database: 436,971
effective search space used: 16604898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)