Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0027.Seq
         (279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   0.92 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   0.92 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   0.92 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   4.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 0.92
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +3

Query: 135 VAIRMPPVIPINH-----YLGVLKTN 197
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 0.92
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +3

Query: 135 VAIRMPPVIPINH-----YLGVLKTN 197
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 0.92
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +3

Query: 135 VAIRMPPVIPINH-----YLGVLKTN 197
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 123 NSWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 1
           N  +VAR   A  F   V IN+     +  R+   L+ T+N
Sbjct: 351 NQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLLXTLN 391


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 112  RRKTNISESICQRCFHQ 62
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 203 RTEIIFYYSMHEIFKQHFSP 262
           ++E I  Y MH+I K+  SP
Sbjct: 257 KSEPIDAYEMHQISKKKLSP 276


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 149 HSYCDVRGEILGSSQDEHQRKHLP 78
           H YC VR         ++ R++LP
Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLP 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,418
Number of Sequences: 438
Number of extensions: 1405
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)