Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0027.Seq
         (279 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10890.1 68417.m01772 expressed protein                             27   1.4  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   1.4  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    27   1.9  
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    26   4.3  
At3g62400.2 68416.m07010 expressed protein cytochrome c oxidase ...    25   7.5  
At3g62400.1 68416.m07009 expressed protein cytochrome c oxidase ...    25   7.5  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    25   7.5  
At1g50950.1 68414.m05728 thioredoxin-related contains weak hit t...    25   7.5  
At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy cha...    25   7.5  
At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative / phos...    25   9.9  

>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 109 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 8
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 72  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 206
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 111 RSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSSS 251
           RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 85  ICQRCFHQSRTKVRGSKAIRY 23
           +C RCF  ++T+    K++RY
Sbjct: 129 VCARCFGPAKTRCSRCKSVRY 149


>At3g62400.2 68416.m07010 expressed protein cytochrome c oxidase
           subunit 5c - Oryza sativa, EMBL:AB027123
          Length = 86

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 121 ISPLTSQYECPQLSLLIITSEF 186
           +SPL S++EC  L+L ++ S F
Sbjct: 20  LSPLKSEWECLSLTLNVVGSIF 41


>At3g62400.1 68416.m07009 expressed protein cytochrome c oxidase
           subunit 5c - Oryza sativa, EMBL:AB027123
          Length = 86

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 121 ISPLTSQYECPQLSLLIITSEF 186
           +SPL S++EC  L+L ++ S F
Sbjct: 20  LSPLKSEWECLSLTLNVVGSIF 41


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 108 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPR 212
           RRS + + N+    PP+ PI+H    L   KI+PR
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPR 86


>At1g50950.1 68414.m05728 thioredoxin-related contains weak hit to
           Pfam PF00085: Thioredoxin; contains 2 predicted
           transmembrane domains
          Length = 484

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +3

Query: 159 IPINHYLGVLKTNKIEPRS---YSIIPCTKYSS-SILARFEH 272
           + I HYL ++KT  I  RS   +S+I   +Y++ S +AR  H
Sbjct: 378 VTIEHYLQIIKTEVISRRSGQEHSLIEEYEYTAHSSVARSYH 419


>At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy
           chain-related similar to SP|Q61704 Inter-alpha-trypsin
           inhibitor heavy chain H3 precursor {Mus musculus};
           contains Pfam profile PF00092: von Willebrand factor
           type A domain
          Length = 754

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 94  SESICQRCFHQSRTKVRGSKAIRY 23
           +E +C+ C HQ + K+R +  +R+
Sbjct: 242 TEVLCKGCSHQLKEKLRSAGKLRF 265


>At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative contains
           Pfam PF00650 : CRAL/TRIO domain and PF03765 : CRAL/TRIO,
           N-terminus; similar to polyphosphoinositide binding
           protein Ssh2p GB:AAB94599 GI:2739046 from [Glycine max]
          Length = 255

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 155 WGHSYCDVRGEILGSS 108
           WG+S CD+RG +   S
Sbjct: 162 WGYSNCDIRGYLAALS 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,367,837
Number of Sequences: 28952
Number of extensions: 88279
Number of successful extensions: 214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)