Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0025.Seq
         (439 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DC1FED Cluster: UPI0000DC1FED related cluster; n...    36   0.29 
UniRef50_Q4X807 Cluster: Putative uncharacterized protein; n=1; ...    36   0.29 
UniRef50_UPI0000DC0CD1 Cluster: UPI0000DC0CD1 related cluster; n...    34   1.2  
UniRef50_UPI000069DB5B Cluster: UPI000069DB5B related cluster; n...    33   2.0  
UniRef50_UPI0000F30DD5 Cluster: UPI0000F30DD5 related cluster; n...    33   2.7  
UniRef50_A0ZIT6 Cluster: Transferase, hexapeptide repeat family ...    33   3.5  
UniRef50_UPI0000DB76CC Cluster: PREDICTED: similar to serine/thr...    32   4.7  
UniRef50_UPI00006A2C7F Cluster: UPI00006A2C7F related cluster; n...    31   8.1  
UniRef50_Q58LI8 Cluster: Possible dioxygenase; n=1; Cyanophage P...    31   8.1  

>UniRef50_UPI0000DC1FED Cluster: UPI0000DC1FED related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC1FED UniRef100 entry -
           Rattus norvegicus
          Length = 239

 Score = 36.3 bits (80), Expect = 0.29
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +3

Query: 87  YIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDT 233
           Y+  Y  V +Y H   H      KH   TYI++  N H+H H YK T T
Sbjct: 194 YVFVYMHVCMYTHTNMHIHTHTYKH---TYIHTHTNTHIHIHTYKHTHT 239



 Score = 32.7 bits (71), Expect = 3.5
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +3

Query: 33  ETDLLYNNNHNHTKH*SYYIECYCT-VKLYIHVPAHGARPITKH*IITYINSERNPHLHG 209
           E+D  Y + H HT    Y     CT +  ++H   H    +  H  I Y++   + H H 
Sbjct: 63  ESDFTYTHTHTHTHIYIYIYTLMCTHLHTHVHTYMHIHTHMYTHTHIIYMHVHTHIHTHV 122

Query: 210 HQYKTTDTYLLTH 248
           H +    +   TH
Sbjct: 123 HIHTYLQSCAHTH 135


>UniRef50_Q4X807 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 104

 Score = 36.3 bits (80), Expect = 0.29
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -3

Query: 341 CAIFYNSNTIVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMSV*MGITLRIDVCNYL 162
           C   Y    + +C   C C+++  Y +V   VC  +CV  +V M + M + + + VC Y 
Sbjct: 18  CVCMYICVYVCVCVCMCVCMYVCVYAYVCMYVC--VCVCMYVCMRLYMYVCMPMYVCMY- 74

Query: 161 MFCYRSGTVC 132
           ++ Y    VC
Sbjct: 75  VYVYVCMCVC 84


>UniRef50_UPI0000DC0CD1 Cluster: UPI0000DC0CD1 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC0CD1 UniRef100 entry -
           Rattus norvegicus
          Length = 270

 Score = 34.3 bits (75), Expect = 1.2
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +3

Query: 87  YIECYCTVKLYIHVPAHGARPITKH*IITYINSER--NPHLH--GHQYKTTDTYLLTHNM 254
           YI  Y  +  ++HV  H +  I KH   TY ++ +  + H+H   H Y   DT+   H  
Sbjct: 91  YIHMYINMYTHMHVYKHVSIYIYKHAYTTYTDAHKHISTHMHVFKHVYAHIDTHTQMHMC 150

Query: 255 PYESVKFEPNTRTVLKTNDNS 317
            +E      +T T   T+ ++
Sbjct: 151 RHECTHTHTHTHTHTHTDTDT 171


>UniRef50_UPI000069DB5B Cluster: UPI000069DB5B related cluster; n=1;
           Xenopus tropicalis|Rep: UPI000069DB5B UniRef100 entry -
           Xenopus tropicalis
          Length = 372

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 48  YNNNHNHTKH*SY-YIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKT 224
           Y + H HT   +Y +   Y     YIH   H    I  + + T+I++  + H+H + +  
Sbjct: 22  YIHTHTHTHTHTYIHTHTYTHTHAYIHTYTHTHTNIHTY-LHTHIHTHTHTHIHTYTHIH 80

Query: 225 TDTYLLTHN 251
           T TY+ T +
Sbjct: 81  THTYIHTQS 89


>UniRef50_UPI0000F30DD5 Cluster: UPI0000F30DD5 related cluster; n=1;
           Bos taurus|Rep: UPI0000F30DD5 UniRef100 entry - Bos
           Taurus
          Length = 403

 Score = 33.1 bits (72), Expect = 2.7
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
 Frame = +3

Query: 99  YCTVKLYIHVPAHGARPITKH*-IITYINSERNPHLHGHQYKTTDTYLLTHNMPYE---- 263
           +  + LY HV  H    +  H  + T+I +    H H H +  T T+ LTH   +     
Sbjct: 267 FLCIYLYTHVYVHVCICVHTHVHVCTHIPAHIGRHTHTHTHTHTHTHTLTHRFFHAFYHI 326

Query: 264 --SVKFEPNTRTVLKTNDNSIGIVEDCAMRGFK-RRILHART 380
             S+ F+P+T T ++   ++         RG +    LH +T
Sbjct: 327 IFSLLFKPHTVTAMRAQMHAQPHTRTPYTRGHRAHTALHTQT 368


>UniRef50_A0ZIT6 Cluster: Transferase, hexapeptide repeat family
           protein; n=1; Nodularia spumigena CCY 9414|Rep:
           Transferase, hexapeptide repeat family protein -
           Nodularia spumigena CCY 9414
          Length = 209

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 135 VLGRECKALLYNNIRCSSSNVLYDCDCYCTVN 40
           +LG++C      +IRCS S+ ++D D  C +N
Sbjct: 130 ILGKDCLVSYEVDIRCSDSHAVFDQDTKCRIN 161


>UniRef50_UPI0000DB76CC Cluster: PREDICTED: similar to
           serine/threonine kinase 36; n=1; Apis mellifera|Rep:
           PREDICTED: similar to serine/threonine kinase 36 - Apis
           mellifera
          Length = 800

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = +3

Query: 45  LYNNNHNHTKH*SYYIECYCTVKLYIHVP------AHGARPITKH*IITYINSERNPHLH 206
           L N     T H S YI  Y TVK+ I +           R I +    T+ +  R P  H
Sbjct: 285 LQNLTVQPTDHQSKYIYVYITVKIQIFLEKAIKKLQEHERTIEERRQKTFTSYPRYPIAH 344

Query: 207 GH-QYKTTDTYLLTHNMP 257
           G+ QY T   Y L H+ P
Sbjct: 345 GYCQYDTNQCYTLRHSEP 362


>UniRef50_UPI00006A2C7F Cluster: UPI00006A2C7F related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A2C7F UniRef100 entry -
           Xenopus tropicalis
          Length = 312

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 23/95 (24%), Positives = 38/95 (40%)
 Frame = -3

Query: 371 VKNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMSV*MGI 192
           V  +   T HC++   +   V C  H AC+ +       H  C  + V C V  +V M +
Sbjct: 179 VHTTGCMTVHCSVHTTACMTVHCSVHTACMTV---HCSVHTAC--MTVHCSVHTTVCMTV 233

Query: 191 TLRIDVCNYLMFCYRSGTVCWDVNVKLYCTITFDV 87
              +      + C    TVC  V+  ++ T+   V
Sbjct: 234 HCSVHTACMTVHCRVHTTVCMTVHCSVHTTVCMTV 268



 Score = 31.5 bits (68), Expect = 8.1
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = -3

Query: 374 CVKNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMSV*MG 195
           C  +++  T HC++       V C  H AC  +  +  V   VC  + V C V  +V M 
Sbjct: 212 CSVHTACMTVHCSVHTTVCMTVHCSVHTAC--MTVHCRVHTTVC--MTVHCSVHTTVCMT 267

Query: 194 I--TLRIDVCNYLMFCYRSGTVCWDVNVKLYCTITFDV 87
           +  ++   VC   + C    TVC +V+  ++ T+  +V
Sbjct: 268 VHCSVHTTVC-MTVHCRVHTTVCMNVHCSVHTTVCMNV 304


>UniRef50_Q58LI8 Cluster: Possible dioxygenase; n=1; Cyanophage
           P-SSM4|Rep: Possible dioxygenase - Cyanophage P-SSM4
          Length = 196

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 180 NSERNPHLHGHQYKTTDTYLLTHNMPYESVK 272
           N ER PH    Q   T+ ++L HN  YE +K
Sbjct: 44  NQERKPHQRKDQCLATEDFILDHNCGYEYMK 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,682,791
Number of Sequences: 1657284
Number of extensions: 7910874
Number of successful extensions: 20026
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19815
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)