Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0025.Seq
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   2.9  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   3.9  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   6.7  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    24   8.9  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    24   8.9  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    24   8.9  

>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 154 QNIK*LHTSILSVIPIYTDISTKQRTHIYLHTTCPT 261
           +N+K    S L++  I+   + +  TH +L+  CPT
Sbjct: 537 KNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPT 572


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 349 PLIAQSSTIPILLSFVFSTVRV-FGSNFTDS*GM--LCVSKYVSVVLY*CPCRWGL 191
           P+I   S       F+F+     + S F D  G   +C+   +SVV+  CPC  GL
Sbjct: 436 PVIVALSISTFTFWFLFTKYSSKYPSVFDDPMGKFAVCLKLTISVVVVACPCALGL 491


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 237 LLTHNMPYESVKFEPNTRTVLKTNDNSIGIV 329
           +L H     ++ F P T+ +L  +DN +G +
Sbjct: 73  VLQHGAGSSAMSFAPVTQELLSNSDNKVGFL 103


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 358 LLKPLIAQSSTIPILLSFVFST 293
           ++ PLI +++TIP   S VFST
Sbjct: 407 VMTPLIKRNTTIPTKKSEVFST 428


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 366 LHARTLRTPRYSMSW 410
           LH  +L T RY+MSW
Sbjct: 161 LHVGSLLTTRYAMSW 175


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 355 LKPLIAQSSTIPILLSFVFSTVRVFGSNFTDS*GMLCVSKYVS 227
           + PL A  ST   L   +   +  + +N  +  G  CVS Y+S
Sbjct: 567 MSPLFA-CSTYSALAFILLQVISSYVTNCREEQGAFCVSTYIS 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,474
Number of Sequences: 5004
Number of extensions: 35866
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)