Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0025.Seq
(439 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055) 33 0.10
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9) 33 0.10
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 30 0.96
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_8315| Best HMM Match : Ras (HMM E-Value=0) 27 5.1
SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7) 27 5.1
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5) 27 8.9
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 27 8.9
>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
Length = 685
Score = 33.1 bits (72), Expect = 0.10
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 111 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKTTDTYLLTHNMPY 260
++++H P H AR T+ TY + H+H H+Y T+ T Y
Sbjct: 263 QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 313
>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
Length = 231
Score = 33.1 bits (72), Expect = 0.10
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 111 KLYIHVPAHG-ARPITKH*IITYINSERNPHLHGHQYKTTDTYLLTHNMPY 260
++++H P H AR T+ TY + H+H H+Y T+ T Y
Sbjct: 38 QMHVHAPGHANARTRTQARKCTYTHPGTQMHVHAHKYANAHTHTQTRKCTY 88
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 29.9 bits (64), Expect = 0.96
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 156 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 10
L SV + + ++LY+ I C S+VLYD DC + L+ + C +S
Sbjct: 221 LSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLS 270
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 156 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 10
L V + L ++LY+ I C S+VLYD DC + L+ + C +S
Sbjct: 65 LSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLSCVLYDAIDCRLS 114
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 156 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 10
L SV + + +LY+ I C S+VLYD DC + L+ + C +S
Sbjct: 89 LSSVLYDAIDCRLSCVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 138
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 111 LLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 10
+LY+ I C S VLYD DC + L++ + C +S
Sbjct: 8 VLYDAIDCRLSCVLYDAIDCRLSCVLYVAIDCRLS 42
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 156 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 10
L V + + +LY+ I C S VLYD DC + L++ + C +S
Sbjct: 137 LSGVLYDAIDCRLSGVLYDAIDCRLSWVLYDAIDCRLSCVLYVAIDCRLS 186
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 156 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 10
L V + L ++LY+ I C S+VLYD DC + L+ + C +S
Sbjct: 209 LSCVLYDALDCRLSSVLYDAIDCRLSSVLYDAIDCRLSDVLYDAIDCRLS 258
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 156 LLSVWHRVLGRECKALLYNNIRCSSSNVLYDC-DCYCTVNLFLILSCGMS 10
L SV + + +LY+ I C S VLYD DC + L+ + C +S
Sbjct: 113 LSSVLYDAIDCRLSDVLYDAIDCRLSGVLYDAIDCRLSGVLYDAIDCRLS 162
>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1718
Score = 29.1 bits (62), Expect = 1.7
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = +3
Query: 54 NNHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDT 233
N+ + TKH S C + LY + + + I + +N + + ++D
Sbjct: 109 NHSSETKH-SRESTCDVSPNLYSKPKQDEQKLLNDDNVDILIEAPQNDCVANEKGASSDV 167
Query: 234 YLLTHNM----PYESVKFEPNTRTVLKTNDNSIGIVED 335
+ +HNM P E K E +++T DNS+GI+ D
Sbjct: 168 EV-SHNMGNKLPVEISK-ESRNNVIVQTGDNSLGIIND 203
>SB_8315| Best HMM Match : Ras (HMM E-Value=0)
Length = 565
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 174 YINSERNPHLHGHQYKTTDTYLLTHNMPYESVKFEPNT-RTVLKTNDNSIGIVEDCAMRG 350
YI S LH +T T T + Y F R VL+TN S + C +
Sbjct: 336 YIGSYFRQMLHRLVLQTNVTSARTSDKCYIGSYFRQMLHRLVLQTNVTSARTSDKCYIGS 395
Query: 351 FKRRILHARTLRT 389
+ R++LH L+T
Sbjct: 396 YFRQMLHRLVLQT 408
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 174 YINSERNPHLHGHQYKTTDTYLLTHNMPYESVKFEPNT-RTVLKTNDNSIGIVEDCAMRG 350
YI S LH +T T T + Y F R VL+TN S + C +
Sbjct: 364 YIGSYFRQMLHRLVLQTNVTSARTSDKCYIGSYFRQMLHRLVLQTNVTSARTSDKCYIGS 423
Query: 351 FKRRILHARTLRT 389
+ R++LH L+T
Sbjct: 424 YFRQMLHRLVLQT 436
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 174 YINSERNPHLHGHQYKTTDTYLLTHNMPYESVKFEPNT-RTVLKTNDNSIGIVEDCAMRG 350
YI S LH +T T T + Y F R VL+TN S + C +
Sbjct: 392 YIGSYFRQMLHRLVLQTNVTSARTSDKCYIGSYFRQMLHRLVLQTNVTSARTSDKCYIGS 451
Query: 351 FKRRILHARTLRT 389
+ R++LH L+T
Sbjct: 452 YFRQMLHRLVLQT 464
Score = 26.6 bits (56), Expect = 8.9
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 174 YINSERNPHLHGHQYKTTDTYLLTHNMPYESVKFEPNT-RTVLKTNDNSIGIVEDCAMRG 350
YI S LH +T T T + Y F R VL+TN S + C +
Sbjct: 280 YIGSYFRQMLHRLVLQTNVTSARTSDKCYIGWYFRQMLHRLVLQTNVTSACTSDKCYIGS 339
Query: 351 FKRRILHARTLRT 389
+ R++LH L+T
Sbjct: 340 YFRQMLHRLVLQT 352
>SB_41963| Best HMM Match : Metallothio (HMM E-Value=3.7)
Length = 167
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 398 VPRGT*CACVKNSSFKTSH---CAIFYNSNTIVICF*HCACVWLEFYRFVGHVVCK*IC- 231
+ GT CA V + H CAI + + ++C+ CA V V C +C
Sbjct: 64 IVHGTKCAIVHGTKCAIVHGTKCAIVHGTQCAIVCWTKCAIVHGTKCAIVHGTKCAIVCW 123
Query: 230 VRCFVL 213
+C ++
Sbjct: 124 TKCAIV 129
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 27.1 bits (57), Expect = 6.8
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Frame = -2
Query: 312 CHLFLAL----CVCLARILPIRRACCV*VNMCPLFCTDVRVDG--DYAQN*CM*LFNVLL 151
C++ L+L C L R +P + ++ CPL C V A + C L +
Sbjct: 1166 CYVVLSLAMPCCPLLCRAVPCYVVLSLAMSCCPLLCLAVPCYALLSLAMSCCPLLCRAVP 1225
Query: 150 SVWHRVLGRECKALLYNNIRCSSSNVLYDCDCYCTVNLFLIL 25
L C LL ++ S+ ++ C+C ++L
Sbjct: 1226 CYALLSLAMSCCPLLCLAVQSGPSSGIFGAVCFCRYECMVVL 1267
>SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)
Length = 214
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 104 YSKALHSRPSTRCQTDNKTLNNYIHQF*A*SPSTRTSVQNNGHIF 238
Y+ LH P+T + N+ LNN I P ++ + N GH F
Sbjct: 43 YNYTLHYEPNTTSKRKNRQLNNIIWYN---PPFSKNTSTNIGHRF 84
>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 1102
Score = 26.6 bits (56), Expect = 8.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 250 LCVSKYVSVVLY*CPCRW 197
+C +YV VV+ CPCR+
Sbjct: 887 ICPCRYVHVVMSLCPCRY 904
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,350,913
Number of Sequences: 59808
Number of extensions: 283836
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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