Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0025.Seq
         (439 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    30   3.0  
AK126537-1|BAC86582.1|  467|Homo sapiens protein ( Homo sapiens ...    30   4.0  
AK124073-1|BAC85767.1|  536|Homo sapiens protein ( Homo sapiens ...    30   4.0  
AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens ...    30   4.0  
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    29   5.3  
AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens ...    29   7.0  
AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens ...    29   7.0  
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    29   9.3  
AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens ...    29   9.3  
AK123032-1|BAC85519.1|  274|Homo sapiens  factor.  protein.            29   9.3  

>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 60  HNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDTYL 239
           H H  H   Y   +  +  Y H   H    +  H    +IN+  + H+H H +  T T+ 
Sbjct: 254 HIHM-HIHTYTHMHTHMDTYPHTHIHTCTHMHSH---AHINTHTHAHIHMHMHTHTHTHT 309

Query: 240 LTH 248
            TH
Sbjct: 310 YTH 312



 Score = 28.7 bits (61), Expect = 9.3
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +3

Query: 42  LLYNNNHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYK 221
           L + + H HT     +I  Y     ++H P H      +H   TY +S    H+H H + 
Sbjct: 342 LTWTHIHTHT-----HIHIYVYTHTHMHTPTHIYAH--RH-TYTYAHSHTYIHMHTHIHT 393

Query: 222 TTDTYLLTH 248
              TY+  H
Sbjct: 394 HIHTYIYRH 402


>AK126537-1|BAC86582.1|  467|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44573 fis, clone UTERU3016789, moderately
           similar to SH3 domain-binding protein 3BP-2. ).
          Length = 467

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 314 IVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFC 153
           + +C   CACV L  Y  V H VC  +C R  V M V + +T+   VC  +  C
Sbjct: 31  LCVCQSMCACVCLSAYPCV-H-VC--VCQRIRVCMCVSVSLTMCACVCQCIRVC 80


>AK124073-1|BAC85767.1|  536|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42079 fis, clone SYNOV2021320, highly  similar
           to SH3 DOMAIN-BINDING PROTEIN 3BP-2. ).
          Length = 536

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 314 IVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFC 153
           + +C   CACV L  Y  V H VC  +C R  V M V + +T+   VC  +  C
Sbjct: 31  LCVCQSMCACVCLSAYPCV-H-VC--VCQRIRVCMCVSVSLTMCACVCQCIRVC 80


>AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12547 fis, clone NT2RM4000634. ).
          Length = 307

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = -3

Query: 380 CACVKNSSFK-TSHCAIFYNSNTIVIC-F*H---CACVWLEFYRFVGHVVCK*ICVRCFV 216
           CACV   +F     C   +    + +C + H   CACVW+     V   VC  +CV   +
Sbjct: 182 CACVCGCTFVCVCLCVWVHICVCVCLCVWVHICVCACVWVHICVCVPVCVC--LCVWVHI 239

Query: 215 LMSV*MGITLRIDVCNYLMFCYRSGTVCWDVN 120
            + V + + + I VC     C  +G  C  +N
Sbjct: 240 CVCVCLCVWVHICVCVCACVCV-AGPGCQTLN 270



 Score = 28.7 bits (61), Expect = 9.3
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = -3

Query: 380 CACVKNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMSV* 201
           CACV   +F    CA       + +C   C C ++     V   +C  +C+  +V + V 
Sbjct: 158 CACVWGCTF-VCVCACVCGCTFVCVCACVCGCTFVCVCLCVWVHICVCVCLCVWVHICVC 216

Query: 200 MGITLRIDVCNYLMFC 153
             + + I VC  +  C
Sbjct: 217 ACVWVHICVCVPVCVC 232


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = -3

Query: 341 CAIFYNSNTIVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMSV*MGITLRIDVCNYL 162
           C     S  + IC   C C+ +    FV   +C  +CV C       + + + I VC YL
Sbjct: 22  CVCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCV-C-------VSMCVSISVCVYL 73

Query: 161 MFCYRSGTVCWDVNVKLY-----CTITFDVVALMFCM 66
             C    +VC  V+V +Y     C   +  V++  C+
Sbjct: 74  CLCV-CVSVCVYVSVCMYLCVFLCVCVYVSVSVCLCV 109



 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 293 CACVWLEFYRFVGHVVCK*ICVRCFVLMSV*MGITLRIDV--CNYLMFC 153
           C CV +  Y  V   +C  +CV  +V +SV + + L I V  C Y+  C
Sbjct: 76  CVCVSVCVYVSVCMYLCVFLCVCVYVSVSVCLCVYLHISVYLCVYVCIC 124


>AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45585 fis, clone BRTHA3013882. ).
          Length = 201

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -3

Query: 314 IVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMSV*MGITLRIDVCNYLMFCYRSGTV 135
           + +C   C CV L     V   VC  +CV   + + V + + + + +C  + FC  S  V
Sbjct: 73  LCVCVSVCLCVCLHLCVCVCGFVCLCLCVCVCLCVCVCLHLCVCVGLCVSVCFCV-SVCV 131

Query: 134 CWDVNVKLYCTITFDVVALMFCM 66
           C  V V   C   F  V +  C+
Sbjct: 132 CLCVCV---CICVFVCVWVCVCL 151


>AK096940-1|BAC04906.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39621 fis, clone SMINT2001158. ).
          Length = 226

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = +3

Query: 60  HNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*IITYINSERNPHLHGHQYKTTDTYL 239
           H+HT     +I  +    ++ + P H   P+T   I T  ++  + H H H +K T T+ 
Sbjct: 92  HSHT-----HIHSHTHSHIHSNTPTH-THPLTSTHIQT--STVTHTHSHTHAHKHTYTHT 143

Query: 240 LTHNMPYESVKFEPNTRTVLKT 305
            TH  P       P T  +  T
Sbjct: 144 STHTHPLTFTHTYPITHPLTHT 165


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -3

Query: 380 CACVKNSSFKTSHCAIFYNSNTIVICF*HCACVWLEFYRFVGHVVCK*ICVRCFVLMSV* 201
           C CV   ++  +H  +  +++  +  +    CV+   Y +    VC    +   V + V 
Sbjct: 108 CVCVCTHAYIHTHVCVCVHTHIYIHMY---VCVYTRIYTYTCVCVCTHAYIHTHVYVCVH 164

Query: 200 MGITLRIDVCNYL-MFCYRSGTVCWDVNVKLY 108
             I + + VC Y  ++ Y    VC   ++ ++
Sbjct: 165 THIYIHMCVCVYTRIYTYTCMCVCVHTHIYIH 196


>AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41637 fis, clone FEBRA1000030, weakly  similar
           to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 207

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
 Frame = +3

Query: 45  LYNNNHNHTKH*SYYIECYCTVKLYIHVPAHGARPITKH*----IITYINSERNPHLHGH 212
           L+ + H HT    + I  Y     + H   H    +  H     ++T      + H H H
Sbjct: 56  LHTHTHTHTLSLYWLISLYIHTHTHTHTHTHAVLYLPTHTHTHAVLTLAYLPIHTHTHTH 115

Query: 213 QYKTTDTYLLTHNM 254
            +  + T L TH +
Sbjct: 116 THTLSCTSLYTHTL 129


>AK123032-1|BAC85519.1|  274|Homo sapiens  factor.  protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = -3

Query: 287 CVWLEFYRFVGHVVCK*ICVRCFVLMSV*MG--ITLRIDVCNYLMFCYRSGTV---CWDV 123
           CV++  Y  +G   C  +CV  FV + V     I + I VC ++  C  S      C  V
Sbjct: 53  CVFVSVYTCMGVFECVHLCVHLFVCICVGASAWILVCICVCAHVCTCVHSFVYVCGCVHV 112

Query: 122 NVKLY-CTITFDVVALMFCM 66
            +++Y C      V+L  C+
Sbjct: 113 GMRVYLCEHVRMCVSLCACL 132


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,222,255
Number of Sequences: 237096
Number of extensions: 1173296
Number of successful extensions: 2087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)