Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0024.Seq
         (368 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)             32   0.13 
SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73)                      27   4.8  
SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.8  
SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36)                 27   4.8  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)
          Length = 142

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = -1

Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILGWI 255
           DS+K  V+L+ L+Y+   F+GITL  +G+I
Sbjct: 44  DSIKLLVVLYILSYLAQWFSGITLTFIGFI 73


>SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 294 VLQRDHAHHPRLDTLFTLPKAYEMNKAQVDANLELARAKINEITAKVRAA 145
           +++R   +HP   + F  P+ YE  +A +DA ++    ++N I +  + A
Sbjct: 174 IMERMSVNHPTSRSSFVDPRIYEQVRAYIDAAVQ---RRLNSIESPAQIA 220


>SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73)
          Length = 551

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 294 VLQRDHAHHPRLDTLFTLPKAYEMNKAQVDANLELARAKINEITAKVRAA 145
           +++R   +HP   + F  P+ YE  +A +DA ++    ++N I +  + A
Sbjct: 480 IMERMSVNHPTSRSSFVDPRIYEQVRAYIDAAVQ---RRLNSIESPAQIA 526


>SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 294 VLQRDHAHHPRLDTLFTLPKAYEMNKAQVDANLELARAKINEITAKVRAA 145
           +++R   +HP   + F  P+ YE  +A +DA ++    ++N I +  + A
Sbjct: 192 IMERMSVNHPTSRSSFVDPRIYEQVRAYIDAAVQ---RRLNSIESPAQIA 238


>SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36)
          Length = 592

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 294 VLQRDHAHHPRLDTLFTLPKAYEMNKAQVDANLELARAKINEITAKVRAA 145
           +++R   +HP   + F  P+ YE  +A +DA   + +  +N I +  + A
Sbjct: 521 IMERMSVNHPTSRSSFVDPRIYEQVRAHIDA---VVQRHVNSIESPAQIA 567


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 72  HYYXTCKAL*ESXGDYCIC 16
           H Y  C AL E+   YCIC
Sbjct: 95  HNYCICHALWETHHSYCIC 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,772,115
Number of Sequences: 59808
Number of extensions: 76258
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)