Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0024.Seq
(368 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 33 0.064
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 33 0.064
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 33 0.064
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 33 0.064
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 33 0.064
U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical p... 28 2.4
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 27 3.2
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 27 3.2
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 27 3.2
Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical pr... 26 9.7
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -1
Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILG 261
+S+K G++LW LTY+ + F+G TL ILG
Sbjct: 2405 ESIKFGLVLWSLTYIASWFSGFTLAILG 2432
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 252 LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
+F++PK YE N+ +D +L + + + +P R A
Sbjct: 2436 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 2478
>Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical
protein W06A7.3e protein.
Length = 204
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -1
Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILG 261
+S+K G++LW LTY+ + F+G TL ILG
Sbjct: 121 ESIKFGLVLWSLTYIASWFSGFTLAILG 148
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 252 LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
+F++PK YE N+ +D +L + + + +P R A
Sbjct: 152 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 194
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -1
Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILG 261
+S+K G++LW LTY+ + F+G TL ILG
Sbjct: 487 ESIKFGLVLWSLTYIASWFSGFTLAILG 514
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 252 LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
+F++PK YE N+ +D +L + + + +P R A
Sbjct: 518 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 560
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -1
Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILG 261
+S+K G++LW LTY+ + F+G TL ILG
Sbjct: 2401 ESIKFGLVLWSLTYIASWFSGFTLAILG 2428
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 252 LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
+F++PK YE N+ +D +L + + + +P R A
Sbjct: 2432 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 2474
>Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical
protein W06A7.3b protein.
Length = 222
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -1
Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILG 261
+S+K G++LW LTY+ + F+G TL ILG
Sbjct: 139 ESIKFGLVLWSLTYIASWFSGFTLAILG 166
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 252 LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
+F++PK YE N+ +D +L + + + +P R A
Sbjct: 170 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 212
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = -1
Query: 344 DSLKXGVLLWCLTYVGACFNGITLIILG 261
+S+K G++LW LTY+ + F+G TL ILG
Sbjct: 2524 ESIKFGLVLWSLTYIASWFSGFTLAILG 2551
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 252 LFTLPKAYEMNKAQVDANLELARAKINEITAKVRAAVPLGRRA 124
+F++PK YE N+ +D +L + + + +P R A
Sbjct: 2555 VFSVPKVYESNQEAIDPHLATISGHLKNVQNIIDEKLPFLRSA 2597
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 33.1 bits (72), Expect = 0.064
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 261 LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
LD++ + E KA++DAN+E RAKI+EI K
Sbjct: 2582 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 2616
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 33.1 bits (72), Expect = 0.064
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 261 LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
LD++ + E KA++DAN+E RAKI+EI K
Sbjct: 2582 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 2616
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 33.1 bits (72), Expect = 0.064
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 261 LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
LD++ + E KA++DAN+E RAKI+EI K
Sbjct: 396 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 430
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 33.1 bits (72), Expect = 0.064
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 261 LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
LD++ + E KA++DAN+E RAKI+EI K
Sbjct: 2582 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 2616
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 33.1 bits (72), Expect = 0.064
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 261 LDTLFTLPKAYEMNKAQVDANLELARAKINEITAK 157
LD++ + E KA++DAN+E RAKI+EI K
Sbjct: 2582 LDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK 2616
>U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical
protein C32D5.11 protein.
Length = 770
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 258 PTEDDERDPVEARPHVREAPQQHAXLQRVTXSSTRN 365
PT D+E P+E+RP R ++ LQRV R+
Sbjct: 548 PT-DEEIPPIESRPQTRREIERDRLLQRVREFDNRS 582
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 249 TAYPTEDDERDPVEARPHVREAPQQHAXLQRVTXSSTRNS 368
TA+P E RP V+ PQ+ T S+T+NS
Sbjct: 289 TAFPGEASCSSETPKRPKVKRIPQKVQIESNTTASTTQNS 328
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 249 TAYPTEDDERDPVEARPHVREAPQQHAXLQRVTXSSTRNS 368
TA+P E RP V+ PQ+ T S+T+NS
Sbjct: 289 TAFPGEASCSSETPKRPKVKRIPQKVQIESNTTASTTQNS 328
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 249 TAYPTEDDERDPVEARPHVREAPQQHAXLQRVTXSSTRNS 368
TA+P E RP V+ PQ+ T S+T+NS
Sbjct: 289 TAFPGEASCSSETPKRPKVKRIPQKVQIESNTTASTTQNS 328
>Z30662-7|CAA83141.2| 566|Caenorhabditis elegans Hypothetical
protein T16H12.6 protein.
Length = 566
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 267 PRLDTLFTLPKAYEMNKAQVDANLELARA-KINEITAKVRAAVPL 136
P L L T+PKA+E + N+ L +A ++ E +A ++ ++PL
Sbjct: 101 PDLHLLLTIPKAFEQG---IKPNISLQKAVELLEPSAFLQMSIPL 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,910,288
Number of Sequences: 27780
Number of extensions: 54203
Number of successful extensions: 245
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -