Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0024.Seq
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   8.1  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 330 RRAAVVPHVRGGVLQRDHAHHPRLDTLFTLPKAYEMNKAQVDANLEL 190
           R   + PH+    ++R      RL  +FT  K  EM    ++ +L L
Sbjct: 112 RTEPLSPHLLNLEVERWRPLRSRLSPIFTSGKLKEMFYLIIECSLNL 158


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 253 RIQPRMMSVIPLKHAPTYV 309
           R+   M+SVI  +HA  YV
Sbjct: 639 RVSMLMISVITARHAGEYV 657


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 299 GACFNGITLIILGWI 255
           G  F  ITLI+LG I
Sbjct: 47  GLAFPSITLIVLGSI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,707
Number of Sequences: 438
Number of extensions: 830
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)