Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0023.Seq
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 72 3e-14
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 72 3e-14
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 0.56
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 3.0
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 3.0
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 3.9
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 24 6.9
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 24 6.9
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 24 9.1
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 9.1
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 72.1 bits (169), Expect = 3e-14
Identities = 35/96 (36%), Positives = 60/96 (62%)
Frame = -3
Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKD 198
V IGFT + + +KT Y + ++ +++ + + +RE+V KLIP+ I ++
Sbjct: 137 VFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGRE 196
Query: 197 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 90
IE+A I+PL++V +RKVK+LK P+ + KL+ELH
Sbjct: 197 IERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 71.7 bits (168), Expect = 3e-14
Identities = 35/96 (36%), Positives = 59/96 (61%)
Frame = -3
Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKD 198
+ IGFT++ +KT Y + ++ ++ + + ++E+V KLIP+ I +
Sbjct: 137 IFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRA 196
Query: 197 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 90
IEKA + IYPL++V +RKVK+LK P+ + KL+ELH
Sbjct: 197 IEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELH 232
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 0.56
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +2
Query: 98 PSTSRSRNGASSTLSPFGCKHRAE 169
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 165 ARCLHPKGESVEEAPFRDLEVD 100
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 3.0
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -3
Query: 245 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 147
+R++ ++ + +A ++ C GI +R+VC R
Sbjct: 398 VRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 248 QSCDVACNDFTHFLSDCSDLSVLGRSTSCVGSRSPY 355
+S V+ +D T+ + SD+ G ST+C SP+
Sbjct: 375 ESSAVSLSDTTNLNTPISDIPSPGSSTTCSNLSSPH 410
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 24.2 bits (50), Expect = 6.9
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 362 FTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVV-NKLIPDSIAKDIEKA 186
F+ ++S+ + C+ Q + + +H T H S L ++V N ++ ++ ++
Sbjct: 32 FSKRNSILNNQVCFEAIKYIQRHYFSSQSHHVTYLHQSPLEKLVSNGVVNENGDLTMDSL 91
Query: 185 CHGIYPL 165
H IY L
Sbjct: 92 SHQIYLL 98
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 24.2 bits (50), Expect = 6.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 269 YTRRHNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 147
Y R S L++ VN+L P + I HG P D IR
Sbjct: 269 YFNRSYSLLKDEVNRLNPSPLENQIVGRAHGKTP-HDQSIR 308
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 23.8 bits (49), Expect = 9.1
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = -2
Query: 339 PTQDVLRPSTLRSEQSERKCVKSLHATSQ 253
P+QD+ + S L +++ + ++S+H+ S+
Sbjct: 78 PSQDMFQTSDLFERRNDEQVLRSIHSFSR 106
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 23.8 bits (49), Expect = 9.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 101 STSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 241
S + S N +S L R EG PSR QWS +S+ P
Sbjct: 330 SAATSGNISSPALFDSELGARPEGSVAIEPSRVLLQWSSQSSSHTIP 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,320
Number of Sequences: 5004
Number of extensions: 25298
Number of successful extensions: 77
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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