Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0023.Seq
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...    86   8e-18
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...    86   1e-17
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...    85   2e-17
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    29   1.2  
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299     28   2.1  
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811...    28   2.8  
11_04_0417 - 17438023-17438331,17438706-17438795                       27   3.7  
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    27   3.7  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    27   3.7  
02_05_1308 + 35601314-35601390,35602486-35602566,35603513-356040...    27   4.9  
12_01_0686 - 5855216-5858263                                           27   6.5  
06_02_0286 - 13802917-13803336                                         27   6.5  
02_02_0609 + 12105616-12106336,12106514-12106646,12107849-121080...    27   6.5  
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693...    27   6.5  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    26   8.6  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    26   8.6  
10_01_0250 - 2622738-2623328,2626525-2627169,2627701-2627754           26   8.6  
03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402     26   8.6  

>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score = 86.2 bits (204), Expect = 8e-18
 Identities = 39/94 (41%), Positives = 63/94 (67%)
 Frame = -3

Query: 371 CIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKDIE 192
           CIGFT +     ++TCY  A   +  +++ V     +  + +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIE 198

Query: 191 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 90
           KA   I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 199 KATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232


>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 39/94 (41%), Positives = 63/94 (67%)
 Frame = -3

Query: 371 CIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKDIE 192
           CIGFT +     ++TCY  A   +  +++ V     +  + +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIE 198

Query: 191 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 90
           KA   I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 199 KATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 39/94 (41%), Positives = 62/94 (65%)
 Frame = -3

Query: 371 CIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKDIE 192
           CIGFT +     ++TCY  A   +  +++ V     +    +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIE 198

Query: 191 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 90
           K+   I+PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 199 KSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232


>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 239 EVVNKLIPDSIAKDIEKACHGIYPLRD 159
           ++VN  IPD + + ++K C  IY LR+
Sbjct: 34  QLVNTGIPDDLLERVKKVCSDIYKLRE 60


>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
          Length = 556

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 332 KTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPD 213
           K  + PA SG S   E +   YTR    EL + +  +IPD
Sbjct: 341 KLIHMPAQSGSSAVLERMRRGYTREAYLELVQKIRSIIPD 380


>09_04_0689 -
           19480409-19480599,19480780-19480889,19481032-19481117,
           19481410-19481523,19481697-19482066,19482216-19482346,
           19482628-19482736,19482901-19483022,19483113-19483219,
           19483447-19483551,19483654-19483812,19484071-19484126,
           19484200-19484251,19486724-19486821,19487086-19487210
          Length = 644

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 3   LNTLLNGRLVALRPFRLVSGFPLASTAFAVKFHQLRDLETGPL 131
           L+TL +G++V     R +SG P    A  V +H L   E GPL
Sbjct: 366 LSTLPDGKIV-----RGLSGLPKQGPAVIVGYHMLLGFELGPL 403


>11_04_0417 - 17438023-17438331,17438706-17438795
          Length = 132

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 275 NHYTRRHNSELREVVNKLIPDSIAKDIEKACHGIYPLR--DVCIR--KVKVLKRPRFEIS 108
           NH+ +      REV+   +PD I +D+ +       LR  D+ +R  K +V +  R    
Sbjct: 58  NHFLQEGQGIAREVLRAKLPDDIVRDVGRTRREALVLRLYDLLLRLDKTRVSRGGRVCAD 117

Query: 107 KLMEL 93
           +L E+
Sbjct: 118 RLWEI 122


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 125 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 241
           A++  SPF    +  GRC   PS  P   S  S+ +PPP
Sbjct: 79  AAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPP 115


>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 200 PWQWSQESTCSPPP*VQSCDVACNDFTH--FLSDCSDLSVLG 319
           PW W   + CSPPP   S   + +D     FLS C    VLG
Sbjct: 9   PW-WLSTTACSPPP-PSSSSFSLSDRLAFLFLSPCPQRVVLG 48


>02_05_1308 +
           35601314-35601390,35602486-35602566,35603513-35604064,
           35604998-35605408,35606830-35607544
          Length = 611

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 198 HREGLPWHLPSARCLHPKGESVEEAPFRDLEV 103
           H +G  W L   R L P G +V+    RD E+
Sbjct: 212 HHDGEAWRLKIQRLLPPHGITVKHISDRDTEI 243


>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/57 (36%), Positives = 25/57 (43%)
 Frame = +3

Query: 24  RLVALRPFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDANIAQRVDAMAGLL 194
           RL +L+   L       S   A  F QL +L      H  LSD NIA +V A  G L
Sbjct: 116 RLTSLKHLNLSGNIFTMSQLPATGFEQLTELT-----HLDLSDTNIAGKVPAGIGRL 167


>06_02_0286 - 13802917-13803336
          Length = 139

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 45  FRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDANIAQRVDAMAGLL 194
           F  + GFP  S    VK H  + ++T  L HF   D  +   + A+ GLL
Sbjct: 45  FAAILGFPARSRTNRVKIHDEKPMDTNYL-HFLYQD--VDYELGAIKGLL 91


>02_02_0609 +
           12105616-12106336,12106514-12106646,12107849-12108048,
           12108184-12108635,12109018-12109323
          Length = 603

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 307 QVRAIRKKMCEIITRDVTTLNSGR 236
           Q+R+I+KK+  II + VT ++S R
Sbjct: 502 QIRSIKKKIGRIINKPVTAMSSRR 525


>01_06_0393 +
           28968873-28968918,28969048-28969084,28969165-28969384,
           28969557-28969715,28969831-28969950,28972154-28972240,
           28972329-28972418,28972516-28972602,28972761-28972877,
           28972945-28973028,28973585-28975324,28975670-28975816,
           28975998-28976431,28976523-28976667
          Length = 1170

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 24/84 (28%), Positives = 38/84 (45%)
 Frame = +3

Query: 51  LVSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDANIAQRVDAMAGLLDVLGNGVRNQLV 230
           +V GF L S A    F Q       PL+   +   ++A  +   A  L V+G  +R++ V
Sbjct: 111 VVCGFALVSHASVFFFDQ-------PLRQQFVGAVSMASLISMFASPLAVMGVVIRSESV 163

Query: 231 HHLPEFRVVTSRVMISHIFFLIAL 302
             +P F +  S  ++S  F L  L
Sbjct: 164 EFMP-FYLSLSTFLMSASFALYGL 186


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 213 LHCQGHREGLPWHLPSARCL 154
           +HCQ H+ G  WH   + C+
Sbjct: 87  VHCQYHKSGCQWHGNLSDCI 106


>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 272  DFTHFLSDCSDLSVLGRSTSCVGSRSPY 355
            +F H LS+C+DL VL    + +  + PY
Sbjct: 1618 EFLHSLSNCTDLQVLALYDNKLKGQIPY 1645


>10_01_0250 - 2622738-2623328,2626525-2627169,2627701-2627754
          Length = 429

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 30  VALRPFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDAN 158
           V    F  + GFP  S    VK H  + ++T  L HF   D +
Sbjct: 275 VTYAKFAAILGFPARSRTNRVKIHDEKPMDTNSL-HFLYQDVD 316


>03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402
          Length = 346

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 30  VALRPFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDAN 158
           V    F  + GFP  S    VK H  + ++T  L HF   D +
Sbjct: 209 VTYAKFAAILGFPARSRTNRVKIHDEKPMDTNSL-HFLYQDVD 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,871,079
Number of Sequences: 37544
Number of extensions: 196713
Number of successful extensions: 647
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)