Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0023.Seq
(379 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) 107 4e-24
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08) 29 1.7
SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34) 29 1.7
SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26) 29 1.7
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 27 5.1
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 6.7
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_20921| Best HMM Match : WD40 (HMM E-Value=8.9) 26 8.8
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 26 8.8
>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
Length = 147
Score = 107 bits (256), Expect = 4e-24
Identities = 62/128 (48%), Positives = 82/128 (64%), Gaps = 6/128 (4%)
Frame = -3
Query: 371 CIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRR-HNSELREVVNKLIPDSIAKDI 195
CIGFT + +KT Y ++ +K+ V + TR ++L+EVVNKLIPDSI KDI
Sbjct: 22 CIGFTKRRQNQIKKTAYAKHTQIKAIRKKMV-DIITREVSTNDLKEVVNKLIPDSIGKDI 80
Query: 194 EKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH-----XXXXXXXXXXGDKSERPEGY 30
EK+C IYPL DV IRKVKVLK+P+F+I KLME+H G K +R EG+
Sbjct: 81 EKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDR-EGF 139
Query: 29 EPPVQESV 6
EPP+Q++V
Sbjct: 140 EPPIQDTV 147
>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 137 LSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP*VQSCDVACND 274
L P GC R G S P + +Q STC P V S D+ ND
Sbjct: 457 LQPGGCDSRISGGRRKGSSSAPPRGAQRSTCRPG--VCSVDLPSND 500
>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
Length = 739
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 260 RHNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKL 102
RHN EL E++ + + A ++ K + L +C+ K ++ + E+ K+
Sbjct: 67 RHNVELPEILCDVAETAFANEVTKGFFRVRALIRICVTKTQMEIQNALEVVKI 119
>SB_7527| Best HMM Match : DSL (HMM E-Value=2.5e-34)
Length = 542
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 362 FTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYT 264
F S+ K YGP S + QK+N+ HYT
Sbjct: 228 FRTSFSVQCNKNYYGPECSMKCQQKDNIEGHYT 260
>SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26)
Length = 436
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Frame = +2
Query: 170 GRCHGRPSRCPWQWSQESTCSPP-------P*VQSCDVACNDF 277
G+C G P+ PW PP P + SCD C DF
Sbjct: 50 GQCRG-PNNTPWNKQTYKLSLPPASKPVHAPVILSCDACCRDF 91
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 185 RPSRCPWQWSQESTCSPPP*VQSCDVACNDF 277
RP R P++W + +PPP + ++ C+++
Sbjct: 583 RPQRRPYRWKRAKPTTPPP-CKDINLKCDEW 612
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Frame = +2
Query: 101 STSRSRNGASSTLSPFGCKHR----AEGRCHGRPSRCPWQ-----WSQESTCSPPP*VQS 253
S S N ++ P C + A RC RC Q WS E+ CS PP +
Sbjct: 132 SDEMSCNATATPFVPRSCHYWEFQCANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTT 191
Query: 254 C 256
C
Sbjct: 192 C 192
>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 207 CQGHREGLP-WHLPSARCLHPKGESVEEAPFR 115
C G E L HLP +C+ K E+ PFR
Sbjct: 339 CCGSEESLMLMHLPLQKCIGKKDLGSEQRPFR 370
>SB_20921| Best HMM Match : WD40 (HMM E-Value=8.9)
Length = 101
Score = 26.2 bits (55), Expect = 8.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 15 LNGRLVA-LRPFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHL-SDANI 161
+NGR VA P L+ F +K + LR + GP FH+ +D NI
Sbjct: 5 VNGRPVAAFDPEGLI--FAAGIDCEMIKLYDLRSFDKGPFSTFHIQTDPNI 53
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 95 VPSTSRSRNGASSTLSPFGC 154
VP+TSRS + AS +L+ GC
Sbjct: 814 VPATSRSGDSASRSLTNLGC 833
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,057,098
Number of Sequences: 59808
Number of extensions: 220642
Number of successful extensions: 612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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