Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0023.Seq
(379 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X98186-1|CAA66861.1| 269|Anopheles gambiae put. S3a ribosomal p... 126 2e-31
AY578812-1|AAT07317.1| 932|Anopheles gambiae wishful thinking p... 27 0.30
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript... 24 2.1
AY705395-1|AAU12504.1| 569|Anopheles gambiae nicotinic acetylch... 23 2.8
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 23 2.8
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc... 22 6.5
AJ439353-7|CAD27929.1| 555|Anopheles gambiae putative glycerol ... 22 6.5
DQ655702-1|ABG45862.1| 889|Anopheles gambiae Jxc1 protein. 22 8.6
DQ004399-1|AAY21238.1| 847|Anopheles gambiae lysozyme c-6 protein. 22 8.6
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 22 8.6
>X98186-1|CAA66861.1| 269|Anopheles gambiae put. S3a ribosomal
protein homologue protein.
Length = 269
Score = 126 bits (305), Expect = 2e-31
Identities = 72/131 (54%), Positives = 83/131 (63%), Gaps = 7/131 (5%)
Frame = -3
Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNS-ELREVVNKLIPDSIAK 201
V CIGFT KDS+SQRKTCY HS N + + R S +L+ VV KL+PDSIAK
Sbjct: 140 VFCIGFTIKDSMSQRKTCYAQ-HSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAK 198
Query: 200 DIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE------RP 39
DIEKAC +YPL DV IRKVKVLK+PRF++S LMELH + RP
Sbjct: 199 DIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVVRP 258
Query: 38 EGYEPPVQESV 6
EGYEPPVQ SV
Sbjct: 259 EGYEPPVQASV 269
>AY578812-1|AAT07317.1| 932|Anopheles gambiae wishful thinking
protein.
Length = 932
Score = 26.6 bits (56), Expect = 0.30
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 174 LPSARCLHPKGESVEEAPFRDLEVDGT 94
+P C H G ++E+A LE DGT
Sbjct: 557 MPPKGCSHDDGPALEKAQLYQLESDGT 583
>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
protein.
Length = 1009
Score = 23.8 bits (49), Expect = 2.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 144 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 230
L+ AN QR++ L D++G+ RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588
>AY705395-1|AAU12504.1| 569|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 2 protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 294 SERKCVKSLHATSQL*TQGGGEQVDS*LHCQGHREG 187
S+ K +L A SQ+ GG DS H QG G
Sbjct: 389 SKSKFGAALAAHSQMQPNSGGSSPDSIRHMQGRPGG 424
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 23.4 bits (48), Expect = 2.8
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +2
Query: 119 NGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 235
NG + G H G RPSR ++ S C P
Sbjct: 146 NGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184
>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
channel alpha1 subunit protein.
Length = 1893
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3
Query: 36 LRPFRLVSGFP 68
LRP RLVSG P
Sbjct: 220 LRPLRLVSGVP 230
>AJ439353-7|CAD27929.1| 555|Anopheles gambiae putative glycerol
kinase protein.
Length = 555
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 45 FRLVSGFPLASTAFAVKFHQLRD 113
FR +SG P++ A+K + L+D
Sbjct: 135 FRALSGLPISPYFSALKLNWLKD 157
>DQ655702-1|ABG45862.1| 889|Anopheles gambiae Jxc1 protein.
Length = 889
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -3
Query: 314 AHSGQSNQKENV*NHYTRRHNS 249
AH Q Q++ + +H+ HN+
Sbjct: 148 AHQQQQQQQQQLHHHHHHHHNA 169
>DQ004399-1|AAY21238.1| 847|Anopheles gambiae lysozyme c-6 protein.
Length = 847
Score = 21.8 bits (44), Expect = 8.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 203 WQWSQESTCSPPP*VQSCDVAC 268
+Q S E CSPP C ++C
Sbjct: 554 FQLSDEYWCSPPGRGWVCGISC 575
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 21.8 bits (44), Expect = 8.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 153 ANIAQRVDAMAGLLDVLGNGVRNQLV 230
A QR++ L D++GN RN+++
Sbjct: 568 ARSLQRINIPKYLYDIIGNYFRNRVL 593
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,356
Number of Sequences: 2352
Number of extensions: 7428
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 28646721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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