Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0023.Seq
(379 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 124 4e-29
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 124 4e-29
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 124 4e-29
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 124 4e-29
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 111 2e-25
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 36 0.013
AY051866-1|AAK93290.1| 332|Drosophila melanogaster LD36157p pro... 31 0.49
AE014298-2587|AAF48743.1| 332|Drosophila melanogaster CG8326-PA... 31 0.49
DQ423241-1|ABD96028.1| 1573|Drosophila melanogaster Gef26 dizzy ... 29 2.6
AF434686-1|AAL28130.1| 1573|Drosophila melanogaster guanine nucl... 29 2.6
AE014134-1072|AAF52365.2| 1573|Drosophila melanogaster CG9491-PA... 29 2.6
BT010007-1|AAQ22476.1| 1425|Drosophila melanogaster RE28166p pro... 28 4.6
AF257463-1|AAG27544.1| 1425|Drosophila melanogaster BRCT-domain ... 28 4.6
AE014298-1949|AAF48306.1| 1425|Drosophila melanogaster CG11156-P... 28 4.6
DQ138908-1|ABA86514.1| 1412|Drosophila melanogaster CG11156 prot... 27 8.0
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 124 bits (299), Expect = 4e-29
Identities = 67/129 (51%), Positives = 80/129 (62%), Gaps = 5/129 (3%)
Frame = -3
Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKD 198
V CIGFT KD SQRKTCY + + ++L+++VNKL DSIAKD
Sbjct: 140 VFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKD 199
Query: 197 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE-----RPEG 33
IEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE RPEG
Sbjct: 200 IEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEG 259
Query: 32 YEPPVQESV 6
YEPPVQE+V
Sbjct: 260 YEPPVQEAV 268
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 124 bits (299), Expect = 4e-29
Identities = 67/129 (51%), Positives = 80/129 (62%), Gaps = 5/129 (3%)
Frame = -3
Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKD 198
V CIGFT KD SQRKTCY + + ++L+++VNKL DSIAKD
Sbjct: 35 VFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKD 94
Query: 197 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE-----RPEG 33
IEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE RPEG
Sbjct: 95 IEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEG 154
Query: 32 YEPPVQESV 6
YEPPVQE+V
Sbjct: 155 YEPPVQEAV 163
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 124 bits (299), Expect = 4e-29
Identities = 67/129 (51%), Positives = 80/129 (62%), Gaps = 5/129 (3%)
Frame = -3
Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKD 198
V CIGFT KD SQRKTCY + + ++L+++VNKL DSIAKD
Sbjct: 90 VFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKD 149
Query: 197 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE-----RPEG 33
IEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE RPEG
Sbjct: 150 IEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEG 209
Query: 32 YEPPVQESV 6
YEPPVQE+V
Sbjct: 210 YEPPVQEAV 218
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 124 bits (299), Expect = 4e-29
Identities = 67/129 (51%), Positives = 80/129 (62%), Gaps = 5/129 (3%)
Frame = -3
Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKD 198
V CIGFT KD SQRKTCY + + ++L+++VNKL DSIAKD
Sbjct: 140 VFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKD 199
Query: 197 IEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE-----RPEG 33
IEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE RPEG
Sbjct: 200 IEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEG 259
Query: 32 YEPPVQESV 6
YEPPVQE+V
Sbjct: 260 YEPPVQEAV 268
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 111 bits (268), Expect = 2e-25
Identities = 64/130 (49%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Frame = -3
Query: 377 VXCIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRR-HNSELREVVNKLIPDSIAK 201
V CIGFT KD SQRKTCY + + + + T ++L+++VNKL DSIAK
Sbjct: 141 VFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNEVSGADLKQLVNKLALDSIAK 200
Query: 200 DIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGDKSE-RPEG--- 33
DIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH SE P+
Sbjct: 201 DIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAPKSTAL 260
Query: 32 -YEPPVQESV 6
+PPVQESV
Sbjct: 261 KVKPPVQESV 270
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 36.3 bits (80), Expect = 0.013
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = -3
Query: 377 VXCIGFTNKDSLSQRKTCY 321
V CIGFT KD SQRKTCY
Sbjct: 140 VFCIGFTAKDQQSQRKTCY 158
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -1
Query: 316 QHTQVRAIRKKMCEIITRDVTTLNSGRW*TS*FLTPLPRTSRRPAMASTLCAMF 155
Q +QVR IR +M +IIT +V+ + + TS T L + S++ A MF
Sbjct: 160 QQSQVRKIRARMTDIITNEVSGADLKQLLTSWPWTRLRKISKKAVSAYIHYMMF 213
>AY051866-1|AAK93290.1| 332|Drosophila melanogaster LD36157p
protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.49
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = -3
Query: 317 PAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVK 138
P S S + N+ LR V N++ S+ + +A +G+ +R+ ++
Sbjct: 84 PGSSSSSKETRNIKQFANETDEDYLRRV-NRMTNASVREAHYEAKYGVNVIRNPKTGEIT 142
Query: 137 VLKRPRFEISKLME 96
V KRP+ EI +L++
Sbjct: 143 VQKRPKNEIDELLK 156
>AE014298-2587|AAF48743.1| 332|Drosophila melanogaster CG8326-PA
protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.49
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = -3
Query: 317 PAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVK 138
P S S + N+ LR V N++ S+ + +A +G+ +R+ ++
Sbjct: 84 PGSSSSSKETRNIKQFANETDEDYLRRV-NRMTNASVREAHYEAKYGVNVIRNPKTGEIT 142
Query: 137 VLKRPRFEISKLME 96
V KRP+ EI +L++
Sbjct: 143 VQKRPKNEIDELLK 156
>DQ423241-1|ABD96028.1| 1573|Drosophila melanogaster Gef26 dizzy AI
isoform protein.
Length = 1573
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 98 PSTSRSRNGASSTLSPFGCKHR--AEGRCHGRPSRCPWQWSQESTCSPPP*VQSCDVA 265
P+TS N T SP C HR A G + PSR + S T +PPP + S D++
Sbjct: 1325 PATSAVAN-VQCTPSPSPCSHRRLASGG-NIIPSRAIHERSHSDTPAPPPPLPSVDLS 1380
>AF434686-1|AAL28130.1| 1573|Drosophila melanogaster guanine
nucleotide exchange factor protein.
Length = 1573
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 98 PSTSRSRNGASSTLSPFGCKHR--AEGRCHGRPSRCPWQWSQESTCSPPP*VQSCDVA 265
P+TS N T SP C HR A G + PSR + S T +PPP + S D++
Sbjct: 1325 PATSAVAN-VQCTPSPSPCSHRRLASGG-NIIPSRAIHERSHSDTPAPPPPLPSVDLS 1380
>AE014134-1072|AAF52365.2| 1573|Drosophila melanogaster CG9491-PA
protein.
Length = 1573
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 98 PSTSRSRNGASSTLSPFGCKHR--AEGRCHGRPSRCPWQWSQESTCSPPP*VQSCDVA 265
P+TS N T SP C HR A G + PSR + S T +PPP + S D++
Sbjct: 1325 PATSAVAN-VQCTPSPSPCSHRRLASGG-NIIPSRAIHERSHSDTPAPPPPLPSVDLS 1380
>BT010007-1|AAQ22476.1| 1425|Drosophila melanogaster RE28166p
protein.
Length = 1425
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 296 CSDLSVLGRSTSCVGSRSP 352
CSDLS + S S VGS SP
Sbjct: 346 CSDLSTVNESVSSVGSSSP 364
>AF257463-1|AAG27544.1| 1425|Drosophila melanogaster BRCT-domain
protein MUS101 protein.
Length = 1425
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 296 CSDLSVLGRSTSCVGSRSP 352
CSDLS + S S VGS SP
Sbjct: 346 CSDLSTVNESVSSVGSSSP 364
>AE014298-1949|AAF48306.1| 1425|Drosophila melanogaster CG11156-PA
protein.
Length = 1425
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 296 CSDLSVLGRSTSCVGSRSP 352
CSDLS + S S VGS SP
Sbjct: 346 CSDLSTVNESVSSVGSSSP 364
>DQ138908-1|ABA86514.1| 1412|Drosophila melanogaster CG11156
protein.
Length = 1412
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 296 CSDLSVLGRSTSCVGSRSP 352
CSDLS + S S VGS SP
Sbjct: 339 CSDLSTVNESVSSVGSISP 357
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,436
Number of Sequences: 53049
Number of extensions: 323016
Number of successful extensions: 823
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1003372560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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