Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0023.Seq
(379 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 2.1
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 2.1
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 22 2.1
X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein. 21 3.6
EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2 prot... 21 3.6
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 3.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 3.6
AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2 prot... 21 3.6
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 21 4.8
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 21 6.4
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 21 6.4
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 20 8.4
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 22.2 bits (45), Expect = 2.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 177 AMAGLLDVLGNGVRNQLVHHLPEFRVVTSRVMIS 278
A+ ++ VLGN + V+H + R VT+ ++S
Sbjct: 73 AIVNVMVVLGNVLVILAVYHTSKLRNVTNMFIVS 106
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 2.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 101 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 193
S S+S+ + S++S + + G C RPS
Sbjct: 22 SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.2 bits (45), Expect = 2.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 101 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 193
S S+S+ + S++S + + G C RPS
Sbjct: 22 SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52
>X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein.
Length = 162
Score = 21.4 bits (43), Expect = 3.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 149 GCKHRAEGRC 178
GC R EGRC
Sbjct: 132 GCGERTEGRC 141
>EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 21.4 bits (43), Expect = 3.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 149 GCKHRAEGRC 178
GC R EGRC
Sbjct: 137 GCGERTEGRC 146
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 3.6
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -3
Query: 338 QRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIA 204
+ KTCY P H E H T + L P S+A
Sbjct: 384 KEKTCYYPYHPSTQEDSE---EHLTPKRFHSRAASKEDLSPSSLA 425
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 3.6
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -3
Query: 338 QRKTCYGPAHSGQSNQKENV*NHYTRRHNSELREVVNKLIPDSIA 204
+ KTCY P H E H T + L P S+A
Sbjct: 384 KEKTCYYPYHPSTQEDSE---EHLTPKRFHSRAASKEDLSPSSLA 425
>AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 21.4 bits (43), Expect = 3.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 149 GCKHRAEGRC 178
GC R EGRC
Sbjct: 137 GCGERTEGRC 146
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 21.0 bits (42), Expect = 4.8
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -3
Query: 344 LSQRKTCYGPAHSGQSNQKENV 279
+ RK C AH G S +++++
Sbjct: 89 MQNRKFCAEIAHGGSSKKRKSI 110
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 20.6 bits (41), Expect = 6.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -3
Query: 371 CIGFTNKDSLSQRKTCYGPAHSGQSNQKENV*NHYTRRHNS 249
C F N+D+ HS +S+ + N H + H+S
Sbjct: 414 CANFDNQDNNHYNHNHNQARHSSKSDNQNNN-QHNDQAHHS 453
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 20.6 bits (41), Expect = 6.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 171 VDAMAGLLDVLG 206
V A+AGLL VLG
Sbjct: 300 VGALAGLLSVLG 311
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 20.2 bits (40), Expect = 8.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 316 QHTQVRAIRKKMCEIITRDVTTLNSGR 236
Q+ R ++ +C I R ++LNS R
Sbjct: 23 QNVHTRPSKEPICNICKRVYSSLNSLR 49
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,466
Number of Sequences: 438
Number of extensions: 1798
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 9176370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -