Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0022.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 76 3e-15
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 60 2e-10
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 58 7e-10
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 51 8e-08
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 51 1e-07
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 41 9e-05
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 3.6
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 6.3
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 25 6.3
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 8.4
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 76.2 bits (179), Expect = 3e-15
Identities = 39/73 (53%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTN-IRKAIXSGYFYHIAKFSKGG-H 295
F+QY+S RA DVR+QL +L ERVEIE+VT+ S+ + I+KAI +GYF + A+ + G
Sbjct: 921 FLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIKKAITAGYFSNAARLDRSGDS 980
Query: 294 YKTVKHNQXVMIH 256
Y+TVK NQ V IH
Sbjct: 981 YRTVKSNQTVYIH 993
Score = 66.1 bits (154), Expect = 3e-12
Identities = 26/55 (47%), Positives = 42/55 (76%)
Frame = -1
Query: 265 YDTSNSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELED 101
Y +S++ E P+ +IY ELV T+KE+ RQ+TEI+ +WLLE++PHY+K + +E+
Sbjct: 991 YIHPSSSVAEKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFKPENIEE 1045
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 60.1 bits (139), Expect = 2e-10
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDD----TNIRKAIXSGYFYHIAKFSKG 301
F+ +R+ A +VR+QL MER E+E++++ DD NIR+A+ SG+F +AK S
Sbjct: 585 FLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSAN 644
Query: 300 G-HYKTVKHNQXVMIH 256
G +Y T+K NQ V +H
Sbjct: 645 GKNYVTMKDNQVVSLH 660
Score = 58.4 bits (135), Expect = 6e-10
Identities = 25/52 (48%), Positives = 36/52 (69%)
Frame = -1
Query: 229 PRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKT 74
P WV+Y+E V T+K F+R VT I +WL+E+AP+YY +L+D N K K+
Sbjct: 669 PEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYY---DLDDFDNNKEVKS 717
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 58.0 bits (134), Expect = 7e-10
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = -1
Query: 265 YDTSNSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYK-SKELEDSTNK 89
Y + LF WVIYHEL+ TSKE+M V+ + KWL+EVAP ++K + + S K
Sbjct: 1081 YMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANANQVSKTK 1140
Query: 88 KMPKTL 71
K K L
Sbjct: 1141 KNLKVL 1146
Score = 51.6 bits (118), Expect = 6e-08
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAK-FSKGGHY 292
++Q R RA DVR+QL+ LM+R +V+ I +A+ SGYF ++AK S G Y
Sbjct: 1012 YIQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRELILRALCSGYFTNVAKRDSHEGCY 1071
Query: 291 KTVKHNQXVMIH 256
KT+ N V +H
Sbjct: 1072 KTIVENAPVYMH 1083
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 51.2 bits (117), Expect = 8e-08
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = -1
Query: 232 LPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKE 110
LP +VIYHELV TSKE+M VT ++ WL E YY KE
Sbjct: 1072 LPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSVKE 1112
Score = 43.2 bits (97), Expect = 2e-05
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = -2
Query: 474 KPFVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKG-G 298
K F+ ++ RA D+R+QLV +M + +I + S+SD +R+ + S YF H A +KG G
Sbjct: 990 KHFLHSKTLKRARDIRQQLVEIMSKQKISL-ESVSDWDIVRRVLCSAYF-HQAACAKGIG 1047
Query: 297 HYKTVKHNQXVMIHL 253
Y ++ +H+
Sbjct: 1048 EYVHLRSGMPCHLHV 1062
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 50.8 bits (116), Expect = 1e-07
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = -1
Query: 253 NSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHY 125
+S+LF ++YHELVFT+K ++R V+ I S WL VAPHY
Sbjct: 671 SSSLFGKKVEAIMYHELVFTTKSYVRGVSSIRSNWLNAVAPHY 713
Score = 34.7 bits (76), Expect = 0.008
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 495 RVQWXLXKPFVQYRSXXRAXDVREQLVS--LMERVEIEMVTSLSDDTNIRKAIXSGYFYH 322
R QW + F+ R+ D+R+QL L + E+ ++ + N+ + SGY +
Sbjct: 590 RKQWC-SQNFINRRALKTILDIRKQLREHCLKDGWELNSSPEVNSE-NLLLSFLSGYITN 647
Query: 321 IAKFSKGGHYKTVKHNQXVMIH 256
A G Y+T+ NQ + IH
Sbjct: 648 TALLHPDGSYRTIIGNQTISIH 669
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 41.1 bits (92), Expect = 9e-05
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = -2
Query: 492 VQWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTSL--SDDTNIRKAIXSGYFYHI 319
+QW K ++ Y++ +A D+R LV + + I L SD + I K + G+ ++
Sbjct: 523 LQWC-RKNYLNYQTLRQALDIRTHLVRFLNKFSIPTAQRLPSSDCSKILKCLLDGFVRNV 581
Query: 318 AKFSKGGHYKTVKHNQXVMIHLIVLYLK 235
A G YKT+ Q + VL+ K
Sbjct: 582 AHLQNDGSYKTIGGKQVWLDSSSVLHEK 609
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 238 EDLPRWVIYHELVFTS 191
EDLP W H LVF S
Sbjct: 618 EDLPTWYYRHSLVFVS 633
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -1
Query: 235 DLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPK 77
+LP + LV SK+ M+ + EIE+K ++ +K+ E S+N K+P+
Sbjct: 888 NLPSNQLLAMLVKLSKKIMKCIDEIETK---DIEEELGSNKKTE-SSNSKLPE 936
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 303 GGHYKTVKHNQXVMI--HLIVLYLKTFHDG*FTMSL 202
G HY+ KHN + + H+ +++ HD F + L
Sbjct: 101 GRHYRDSKHNLDIQVFDHIEYVHIHWDHDTQFALEL 136
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +1
Query: 1 NGESGNFX*IYCNQXFTNFLQISPMFWAFSY 93
+G G+ YC Q + ++ P FW +Y
Sbjct: 63 DGHGGDRVAKYCRQHLPDIIKSQPSFWKGNY 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,832
Number of Sequences: 5004
Number of extensions: 31915
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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