Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0022.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0259 - 14974526-14974572,14974670-14974742,14974829-149748... 91 5e-19
05_04_0174 - 18728199-18731411 77 1e-14
02_02_0572 + 11667455-11670783,11672026-11672419 73 1e-13
06_02_0263 - 13566621-13569875 71 5e-13
03_02_0789 + 11207769-11208059,11208370-11208557,11208701-112097... 60 1e-09
01_01_0788 + 6111890-6112002,6112121-6112265,6113012-6113086,611... 54 8e-08
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 53 1e-07
06_01_0645 + 4670966-4671021,4671128-4671177,4671270-4671350,467... 48 6e-06
11_03_0216 + 11821726-11821860,11823217-11823286,11823704-118238... 38 0.003
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 34 0.055
06_03_0642 + 23084397-23084909,23084990-23085123,23085618-230857... 30 1.2
07_01_0239 + 1744353-1746365 29 2.1
07_01_0215 - 1607473-1609494 29 2.7
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 28 3.6
05_07_0062 + 27423081-27423287,27423372-27423449,27423548-274235... 27 8.4
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 27 8.4
>08_02_0259 - 14974526-14974572,14974670-14974742,14974829-14974891,
14975030-14975097,14975172-14975295,14976434-14976493,
14976744-14976806,14976902-14977942,14978027-14978093,
14978188-14978303,14978454-14978540,14978749-14978838,
14979128-14979214,14979366-14979428,14979509-14979566,
14980174-14980231,14980349-14980416,14980508-14980587,
14981084-14981147,14981321-14981392,14981517-14981576,
14982344-14982398,14982487-14982520,14983845-14983931,
14984036-14984122,14984211-14984408,14984509-14984639,
14984739-14984838
Length = 1066
Score = 91.1 bits (216), Expect = 5e-19
Identities = 36/58 (62%), Positives = 50/58 (86%)
Frame = -1
Query: 232 LPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSA 59
LPRWVIYHELV T+KE+MRQVTE++ WL+E+APHYY+ K+++D+ KK+PK G++A
Sbjct: 1008 LPRWVIYHELVLTTKEYMRQVTELKPDWLVEIAPHYYQLKDVDDTGTKKLPKGQGRAA 1065
Score = 71.3 bits (167), Expect = 4e-13
Identities = 33/72 (45%), Positives = 50/72 (69%)
Frame = -2
Query: 456 RSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYKTVKH 277
RS RA D+R+QL L+ERVEIE+ ++ SD I+KAI SG+F+H ++ K G Y+TVK+
Sbjct: 944 RSMKRARDIRDQLEGLLERVEIEISSNASDLDAIKKAITSGFFHHSSRLQKNGSYRTVKN 1003
Query: 276 NQXVMIHLIVLY 241
Q V+ ++ +
Sbjct: 1004 PQTVLPRWVIYH 1015
>05_04_0174 - 18728199-18731411
Length = 1070
Score = 76.6 bits (180), Expect = 1e-14
Identities = 29/56 (51%), Positives = 45/56 (80%)
Frame = -1
Query: 253 NSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKK 86
+S + + PRW +YHELV T+KE+MRQVTE++ +WL+E+APHYY+ K++++ KK
Sbjct: 985 SSGVAQAPPRWALYHELVLTTKEYMRQVTELKPEWLVEIAPHYYERKDVDEPEPKK 1040
Score = 69.7 bits (163), Expect = 1e-12
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = -2
Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTSLS--DDTNIRKAIXSGYFYHIA 316
QW + FVQ+R+ RA DVR+QL +L+ERVEI +S D +RKA+ +GYF H A
Sbjct: 905 QWC-RESFVQHRTMRRARDVRDQLGALLERVEIAPCSSAGGGDLDAVRKAVTAGYFRHAA 963
Query: 315 KFSKGGHYKTVKHNQXVMIH 256
+ + G Y+ VK Q V +H
Sbjct: 964 RLQRDGSYRAVKSRQTVFVH 983
>02_02_0572 + 11667455-11670783,11672026-11672419
Length = 1240
Score = 72.9 bits (171), Expect = 1e-13
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = -1
Query: 265 YDTSNSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKK 86
Y +SALF+ P WVIYHELV T+KE+MR+VT I+ KWL E+AP +YKS + + +K
Sbjct: 1156 YIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLTELAPRFYKSADPTKMSKRK 1215
Score = 68.1 bits (159), Expect = 4e-12
Identities = 32/71 (45%), Positives = 50/71 (70%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
FVQ RS RA DVR+QL+++M+R ++++V++ + T IRKAI +G+F+H A+ Y+
Sbjct: 1088 FVQSRSLRRAQDVRKQLLTIMDRYKLDVVSAGRNFTKIRKAITAGFFFHAARKDPQEGYR 1147
Query: 288 TVKHNQXVMIH 256
T+ NQ V IH
Sbjct: 1148 TLVENQPVYIH 1158
>06_02_0263 - 13566621-13569875
Length = 1084
Score = 70.9 bits (166), Expect = 5e-13
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = -1
Query: 250 SALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKK 86
SALF+ P WVIYHE+V T+KE+MR+VT I+ +WL+E+AP +Y+S + + +K
Sbjct: 1005 SALFQQQPEWVIYHEVVMTTKEYMREVTAIDPRWLVELAPRFYRSADPTKISKRK 1059
Score = 67.7 bits (158), Expect = 5e-12
Identities = 30/71 (42%), Positives = 49/71 (69%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
FVQ S RA DVR+QL+ +M++ ++ +V++ +D T +RKAI +G+F+H A+ G Y+
Sbjct: 932 FVQLTSLRRAQDVRKQLLEIMDKYKLNVVSAGNDLTKVRKAITAGFFFHAARKDPQGGYR 991
Query: 288 TVKHNQXVMIH 256
T+ +Q V IH
Sbjct: 992 TIADHQQVYIH 1002
>03_02_0789 +
11207769-11208059,11208370-11208557,11208701-11209785,
11210163-11210288,11210367-11210605,11210688-11210806,
11210894-11211014
Length = 722
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = -2
Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDD----TNIRKAIXSGYFYH 322
QW F+ R+ A +VR+QLV +M R ++M ++ + NIRKA+ +GYF
Sbjct: 568 QWCYEN-FINARALKSADNVRQQLVRIMTRFNLKMCSTDFNSREYYVNIRKAMLAGYFMQ 626
Query: 321 IAKFSKGGHYKTVKHNQXVMIH 256
+A + GHY TVK NQ V +H
Sbjct: 627 VAHLERTGHYLTVKDNQVVHLH 648
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = -1
Query: 229 PRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTL 71
P WVIY+E V T++ F+R V +I WL++VAPHYY K++ + L
Sbjct: 657 PEWVIYNEYVLTTRNFIRTVMDIRGDWLIDVAPHYYDLSNFPSCEAKRVLERL 709
>01_01_0788 +
6111890-6112002,6112121-6112265,6113012-6113086,
6114171-6114250,6115500-6115569,6115664-6115759,
6116633-6116756,6116921-6116967,6117044-6117127,
6117199-6117252,6117451-6117551,6118744-6118834,
6119989-6120153,6121341-6121412,6122025-6122111,
6122899-6122952,6122992-6123062,6123882-6124029
Length = 558
Score = 53.6 bits (123), Expect = 8e-08
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = -1
Query: 229 PRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYK 119
P+WVIY LV T K +MR V IE WL E APH+Y+
Sbjct: 513 PKWVIYQSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQ 549
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 444 RAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYF 328
+ D+REQLV +++R I + + D +RKAI +G F
Sbjct: 441 KVIDIREQLVRIIKRFGIPLTSCDRDMEAVRKAIIAGAF 479
>07_03_0539 - 19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = -1
Query: 289 NCKT*SXSYDTSNSALFE--DLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKS 116
NC+ + +SAL+ P +V+YHELV T+KE+M+ VT ++ +WL E+ P ++
Sbjct: 1185 NCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVDPQWLAELGPMFFSV 1244
Query: 115 KELEDS 98
KE + S
Sbjct: 1245 KETDTS 1250
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/71 (25%), Positives = 38/71 (53%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
F+ + +A +VR QL+ +++ ++I + + + +RKAI S YF++ A+ G Y
Sbjct: 1125 FLHVKGLRKAREVRSQLLDILKTLKIPLTSCHMEWDVVRKAICSAYFHNAARLKGVGEYV 1184
Query: 288 TVKHNQXVMIH 256
++ +H
Sbjct: 1185 NCRNGMPCHLH 1195
>06_01_0645 +
4670966-4671021,4671128-4671177,4671270-4671350,
4671862-4672078,4673220-4673607,4673830-4674033,
4675174-4675334,4675401-4675586,4675732-4675963,
4676530-4676732,4677074-4677208,4677367-4677550
Length = 698
Score = 47.6 bits (108), Expect = 6e-06
Identities = 19/48 (39%), Positives = 33/48 (68%)
Frame = -1
Query: 253 NSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKE 110
+S LF+ P I++ELV TS+ +++ +T I+ WL E+AP YY +++
Sbjct: 651 SSVLFQKKPDCAIFNELVRTSQNYVKDLTRIDPVWLAELAPQYYATED 698
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNI-RKAIXSGYFYHIAKFSKGGHY 292
F+ YRS A DV Q+ ++++ + V+S DD + R+ + + +F + A G Y
Sbjct: 579 FINYRSLRHACDVHSQIQGHVQQMGLN-VSSCGDDMVLFRRCLTAAFFLNAAMRQPDGSY 637
Query: 291 KTVKHNQXVMIH 256
+ + +Q V IH
Sbjct: 638 RALATSQSVQIH 649
>11_03_0216 +
11821726-11821860,11823217-11823286,11823704-11823861,
11824304-11824479,11824564-11824612,11825293-11825430
Length = 241
Score = 38.3 bits (85), Expect = 0.003
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = -1
Query: 232 LPRWVIYHELVFTSKEFMRQVTEIESKWL 146
LP +V+YHEL+ T++ FMR V+ ++ W+
Sbjct: 136 LPVYVVYHELINTTRPFMRNVSAVDQSWV 164
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 34.3 bits (75), Expect = 0.055
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -1
Query: 253 NSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVA 134
+S++ P +V+Y EL+ T + +M VT ++ W+L+ A
Sbjct: 1027 SSSVARIAPEFVVYSELLHTKRSYMHGVTSVKPGWILKYA 1066
>06_03_0642 +
23084397-23084909,23084990-23085123,23085618-23085731,
23085929-23086112,23086212-23086280,23087319-23087576
Length = 423
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -1
Query: 226 RWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPK 77
+WV+ H+L R++ I + E+ P++++ + D N+K+PK
Sbjct: 255 KWVMMHKLT-------RRLARIPDEVRTEIEPYFFEHASIVDEDNQKLPK 297
>07_01_0239 + 1744353-1746365
Length = 670
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 178 RQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTL 71
R+ E+ W +E PH + KEL +TN + K L
Sbjct: 318 RRYQELHEDWEVEFGPHRFSFKELFKATNGFVDKQL 353
>07_01_0215 - 1607473-1609494
Length = 673
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 169 TEIESKWLLEVAPHYYKSKELEDSTNKKMPKTL 71
TEI+ W +E PH + K L D+T K L
Sbjct: 318 TEIQEDWEVEFGPHRFSYKVLYDATEGFKDKNL 350
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 217 IYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGK 65
+Y + ++QVT+ E + APHY+ + L +S + P L K
Sbjct: 1405 VYFAKTMDERFIIKQVTKTELDSFIGFAPHYF--RHLAESLTSRSPTCLAK 1453
>05_07_0062 +
27423081-27423287,27423372-27423449,27423548-27423597,
27423714-27423767,27423965-27424017,27424101-27424173,
27424718-27424767,27424919-27424987,27425183-27425291,
27425658-27425725,27425982-27426082,27426260-27426412,
27426503-27426570,27426898-27426943,27427027-27427107
Length = 419
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 220 VIYHELVFTSKEFMRQV---TEIESKWLLEVAPHYYKSKELEDSTN 92
++ H++ F E QV TEI S+ L PH K+ E+++N
Sbjct: 319 ILLHKVTFEENELAYQVGETTEILSRGRLCATPHCVKAPSSENASN 364
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 235 DLPRWVIYHELVFTSKEFMRQVTEIESKWL 146
D P W + + K F RQ+ EIESK L
Sbjct: 787 DTPEWTSDPKALEAFKRFSRQLVEIESKVL 816
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,385
Number of Sequences: 37544
Number of extensions: 177556
Number of successful extensions: 344
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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