Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0022.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   2e-17
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            53   1e-07
SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   2e-05
SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.008
SB_44294| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.014
SB_19311| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.014
SB_30597| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    28   4.9  
SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 40/73 (54%), Positives = 51/73 (69%)
 Frame = -2

Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKF 310
           QW     F+Q+RS  RA DVREQL  L+ER EIEM ++  D T IRKA+ +G+FYH A+ 
Sbjct: 550 QWCYEN-FIQHRSMKRARDVREQLEGLIERAEIEMSSNPGDFTAIRKAVTAGFFYHTARL 608

Query: 309 SKGGHYKTVKHNQ 271
            +GG Y+TVKH Q
Sbjct: 609 GRGGQYRTVKHQQ 621



 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = -3

Query: 224 MGDLP*ACIYI*RIYETSHRN*EQMATGGSASLLQ 120
           +G LP A +Y   I+ETS+R+ + +A+ GS SLLQ
Sbjct: 754 VGHLPRARLYYQGIHETSNRDRQYVASRGSPSLLQ 788


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = -1

Query: 229  PRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKE 110
            P +++YHELV TSKE+M+ VT ++  WL E+ P +Y  KE
Sbjct: 1089 PDYIVYHELVMTSKEYMQCVTAVDGNWLAELGPMFYSVKE 1128


>SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = -1

Query: 253 NSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELE 104
           +S+LF   P +V+Y+ELV TSK +MR V+ +   WLLE AP +++   L+
Sbjct: 639 SSSLFMSKPAYVVYNELVHTSKCYMRDVSVVSCDWLLEAAPGFFQEHRLK 688


>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1168

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = -1

Query: 250  SALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPH 128
            SALF  LP++V+Y E+V TSK F++ VT IE +WL  + P+
Sbjct: 973  SALFSVLPQYVVYQEVVETSKLFLKGVTTIEVEWLPVLVPN 1013


>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -1

Query: 265 YDTSNSALFEDLPRWVIYHELVFTSKEFMRQV 170
           Y   +SALF   P WV+YHELV T+KE+MR+V
Sbjct: 879 YIHPSSALFNRQPEWVVYHELVLTTKEYMREV 910



 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 27/71 (38%), Positives = 39/71 (54%)
 Frame = -2

Query: 468  FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
            FVQ RS  RA D+R+Q+  L      ++V+       ++KAI SG+F + A+      Y+
Sbjct: 817  FVQARSLRRAQDIRKQIHKL------DVVSCGKHTARVQKAITSGFFRNAARKDPQEGYR 870

Query: 288  TVKHNQXVMIH 256
            TV  NQ V IH
Sbjct: 871  TVVDNQVVYIH 881


>SB_15717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -2

Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEM----VTSLSDDTNIRKAIXSGYFYH 322
           QW     F+Q+RS   A +VR QL  +M+R  ++       S     NIRKA+ SG+F  
Sbjct: 213 QWCYDN-FIQHRSMKSADNVRGQLARIMDRFNLQRRSTDFNSRDYYLNIRKALVSGFFMQ 271

Query: 321 I 319
           +
Sbjct: 272 V 272


>SB_44294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEM----VTSLSDDTNIRKAIXSGYF 328
           QW     F+Q+RS   A +VR QL  +M+R  ++       S     NIRKA+ SG+F
Sbjct: 6   QWCYDN-FIQHRSMKSADNVRGQLARIMDRFNLQRRSTDFNSRDYYLNIRKALVSGFF 62


>SB_19311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEM----VTSLSDDTNIRKAIXSGYF 328
           QW     F+Q+RS   A +VR QL  +M+R  ++       S     NIRKA+ SG+F
Sbjct: 28  QWCYDN-FIQHRSMKSADNVRGQLARIMDRFNLQRRSTDFNSRDYYLNIRKALVSGFF 84


>SB_30597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
 Frame = -1

Query: 205 LVFTSKEFMR----QVTEIESKWLLEVAPHYYK-SKELEDSTNKKMPKTLG 68
           L +T++EF+     Q T+I+ K+LLE    Y+K SKE+ D T K++  T G
Sbjct: 355 LGYTAEEFLEVPQSQCTDIKFKYLLERCKVYFKVSKEI-DCTGKRISTTFG 404


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 435 DVREQLVSLMERVEIEMVTSLSDDTNIRKAIXS 337
           ++R+Q++SL ER E   +TS+   T++ + + S
Sbjct: 556 EIRDQMISLNERWESLRITSMERQTSLHEQLMS 588


>SB_46458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = -1

Query: 199 FTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSAKN 53
           ++S+EF ++ T+    + + V+PH++KS    +S  K M K + K+ K+
Sbjct: 515 YSSQEF-QEFTKAWEIYHVTVSPHHHKSNGKVESAVKIMKKVIIKAKKD 562


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,702,273
Number of Sequences: 59808
Number of extensions: 211274
Number of successful extensions: 358
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)