Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0022.Seq
         (499 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   3.3  
L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.       23   7.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   7.6  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 300  HLLKILLYDRNNQTX*PFLY*YHQINL*PFQF 395
            H+L+  LY  N+Q+   F +  H   + P QF
Sbjct: 3269 HILQHKLYSNNSQSLNNFKFGLHTQEILPLQF 3300


>L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -1

Query: 187 EFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSAKN 53
           EF+R+   +   WL    P   +      +T +  PK  GK+ K+
Sbjct: 25  EFLRRYVTMGETWLHHYTPESNRQSAQWTATGEPAPKR-GKTQKS 68


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 300  HLLKILLYDRNNQTX*PFLY*YHQINL*PFQF 395
            H+L+   Y  N+Q+   F +  H   + P QF
Sbjct: 3272 HILQHKFYSNNSQSLNNFTFGLHTQEIFPLQF 3303


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,114
Number of Sequences: 2352
Number of extensions: 8378
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)