Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0022.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical pr... 118 3e-27
Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical p... 118 3e-27
AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determini... 118 3e-27
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 68 4e-12
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 68 4e-12
U13644-7|AAM48536.2| 700|Caenorhabditis elegans Hypothetical pr... 58 4e-09
U13644-6|AAB52678.1| 739|Caenorhabditis elegans Hypothetical pr... 58 4e-09
AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical ... 55 3e-08
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 53 1e-07
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 53 1e-07
AC132211-3|AAN01436.1| 330|Caenorhabditis elegans Hypothetical ... 38 0.003
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 34 0.066
AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf (d... 29 1.9
Z50070-8|CAA90397.1| 263|Caenorhabditis elegans Hypothetical pr... 27 5.7
AC024201-17|AAO12395.1| 95|Caenorhabditis elegans Hypothetical... 27 5.7
AC024201-16|AAF36025.1| 192|Caenorhabditis elegans Hypothetical... 27 5.7
AC024201-15|AAF36024.1| 220|Caenorhabditis elegans Hypothetical... 27 5.7
AC006684-2|AAF39959.1| 116|Caenorhabditis elegans Hypothetical ... 27 10.0
>Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical protein
C04H5.6 protein.
Length = 1008
Score = 118 bits (283), Expect = 3e-27
Identities = 56/101 (55%), Positives = 69/101 (68%)
Frame = -1
Query: 355 KKGYXVWLFLSYSKIFKRWSL*NCKT*SXSYDTSNSALFEDLPRWVIYHELVFTSKEFMR 176
+K F + SK+ K ++ NS LFE+ PRWV+Y ELVFTSKEFMR
Sbjct: 905 RKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKEFMR 964
Query: 175 QVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSAKN 53
+++EIES WLLEVAPHYYK +ELED+TNKKMPK GKS K+
Sbjct: 965 EMSEIESGWLLEVAPHYYKGRELEDATNKKMPKNKGKSGKD 1005
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
+VQ+R+ RA DVR+QLV L+ERVEIE +S +D IRKAI +GYFY+++K GHYK
Sbjct: 868 YVQHRTMKRARDVRDQLVGLLERVEIETKSS-TDTIKIRKAITAGYFYNVSKLDNTGHYK 926
Query: 288 TVKHNQXVMIH 256
TVKH H
Sbjct: 927 TVKHKHTTHPH 937
>Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical
protein C04H5.6 protein.
Length = 1008
Score = 118 bits (283), Expect = 3e-27
Identities = 56/101 (55%), Positives = 69/101 (68%)
Frame = -1
Query: 355 KKGYXVWLFLSYSKIFKRWSL*NCKT*SXSYDTSNSALFEDLPRWVIYHELVFTSKEFMR 176
+K F + SK+ K ++ NS LFE+ PRWV+Y ELVFTSKEFMR
Sbjct: 905 RKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKEFMR 964
Query: 175 QVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSAKN 53
+++EIES WLLEVAPHYYK +ELED+TNKKMPK GKS K+
Sbjct: 965 EMSEIESGWLLEVAPHYYKGRELEDATNKKMPKNKGKSGKD 1005
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
+VQ+R+ RA DVR+QLV L+ERVEIE +S +D IRKAI +GYFY+++K GHYK
Sbjct: 868 YVQHRTMKRARDVRDQLVGLLERVEIETKSS-TDTIKIRKAITAGYFYNVSKLDNTGHYK 926
Query: 288 TVKHNQXVMIH 256
TVKH H
Sbjct: 927 TVKHKHTTHPH 937
>AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determining
protein MOG-4 protein.
Length = 1008
Score = 118 bits (283), Expect = 3e-27
Identities = 56/101 (55%), Positives = 69/101 (68%)
Frame = -1
Query: 355 KKGYXVWLFLSYSKIFKRWSL*NCKT*SXSYDTSNSALFEDLPRWVIYHELVFTSKEFMR 176
+K F + SK+ K ++ NS LFE+ PRWV+Y ELVFTSKEFMR
Sbjct: 905 RKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKEFMR 964
Query: 175 QVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSAKN 53
+++EIES WLLEVAPHYYK +ELED+TNKKMPK GKS K+
Sbjct: 965 EMSEIESGWLLEVAPHYYKGRELEDATNKKMPKNKGKSGKD 1005
Score = 81.4 bits (192), Expect = 3e-16
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
+VQ+R+ RA DVR+QLV L+ERVEIE +S +D IRKAI +GYFY+++K GHYK
Sbjct: 868 YVQHRTMKRARDVRDQLVGLLERVEIETKSS-TDTIKIRKAITAGYFYNVSKLDNTGHYK 926
Query: 288 TVKHNQXVMIH 256
TVKH H
Sbjct: 927 TVKHKHTTHPH 937
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 67.7 bits (158), Expect = 4e-12
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = -1
Query: 265 YDTSNSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYK 119
Y +SA F+ P WV+YHELV T+KE+MR+VT I+ KWL+E AP ++K
Sbjct: 1109 YIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFK 1157
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/71 (40%), Positives = 45/71 (63%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
F+Q RS RA D+R+QL+ +M+R ++ MV+ D + ++KAI SG+F + AK Y+
Sbjct: 1041 FIQVRSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSGFFRNAAKRDPQEGYR 1100
Query: 288 TVKHNQXVMIH 256
T+ Q V IH
Sbjct: 1101 TLTDGQNVYIH 1111
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 67.7 bits (158), Expect = 4e-12
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = -1
Query: 265 YDTSNSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYK 119
Y +SA F+ P WV+YHELV T+KE+MR+VT I+ KWL+E AP ++K
Sbjct: 1109 YIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFFK 1157
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/71 (40%), Positives = 45/71 (63%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
F+Q RS RA D+R+QL+ +M+R ++ MV+ D + ++KAI SG+F + AK Y+
Sbjct: 1041 FIQVRSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSGFFRNAAKRDPQEGYR 1100
Query: 288 TVKHNQXVMIH 256
T+ Q V IH
Sbjct: 1101 TLTDGQNVYIH 1111
>U13644-7|AAM48536.2| 700|Caenorhabditis elegans Hypothetical
protein F56D2.6b protein.
Length = 700
Score = 58.0 bits (134), Expect = 4e-09
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Frame = -2
Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTS--LSDD--TNIRKAIXSGYFYH 322
QW F+ YR+ A VR QL +M++ + V++ S D NIRKA+ +G+F
Sbjct: 586 QWCYDN-FINYRTMKTADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQ 644
Query: 321 IAKFSKGGHYKTVKHNQXVMIH 256
+A + GHY TVK NQ V +H
Sbjct: 645 VAHLERSGHYVTVKDNQLVNLH 666
Score = 35.1 bits (77), Expect = 0.029
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 250 SALFEDLPRWVIYHELVFTSKEFMRQVTEI 161
S + + P W +Y+E V T+K F+R VT++
Sbjct: 668 STVLDHKPEWALYNEFVLTTKNFIRTVTDV 697
>U13644-6|AAB52678.1| 739|Caenorhabditis elegans Hypothetical
protein F56D2.6a protein.
Length = 739
Score = 58.0 bits (134), Expect = 4e-09
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Frame = -2
Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTS--LSDD--TNIRKAIXSGYFYH 322
QW F+ YR+ A VR QL +M++ + V++ S D NIRKA+ +G+F
Sbjct: 586 QWCYDN-FINYRTMKTADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQ 644
Query: 321 IAKFSKGGHYKTVKHNQXVMIH 256
+A + GHY TVK NQ V +H
Sbjct: 645 VAHLERSGHYVTVKDNQLVNLH 666
Score = 58.0 bits (134), Expect = 4e-09
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = -1
Query: 250 SALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTL 71
S + + P W +Y+E V T+K F+R VT++ +WLL++AP YY D K+ T+
Sbjct: 668 STVLDHKPEWALYNEFVLTTKNFIRTVTDVRPEWLLQIAPQYYDLDNFPDGDTKRKLTTV 727
>AC091125-4|AAK27888.1| 732|Caenorhabditis elegans Hypothetical
protein Y67D2.6 protein.
Length = 732
Score = 54.8 bits (126), Expect = 3e-08
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTS---LSDDTNIRKAIXSGYFYHIAKFSKGG 298
FV YR RA +VR QLV L++R EIE V+S ++ NIR+ + +G+F A++ G
Sbjct: 588 FVNYRGLMRADNVRSQLVRLLKRFEIEKVSSRGLINCSENIRQCLVTGFFSQAAQYHYTG 647
Query: 297 HYKTVKHN 274
Y TVK +
Sbjct: 648 KYMTVKES 655
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = -1
Query: 265 YDTSNSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKK 86
Y S+ +D P+WVI+ E++ ++ +R VT IE +WL E+APHYY+ + K+
Sbjct: 661 YKGSSIMFKKDYPKWVIFTEVM---QDSIRDVTVIEPEWLYELAPHYYEFGTEGELAEKR 717
Query: 85 MPKTLGKSA 59
M SA
Sbjct: 718 MRGPAATSA 726
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical protein
K03H1.2 protein.
Length = 1131
Score = 53.2 bits (122), Expect = 1e-07
Identities = 20/45 (44%), Positives = 33/45 (73%)
Frame = -1
Query: 232 LPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDS 98
+P +V+YHEL+ T+KE+M+ VT +++ WL E+ P +Y KE + S
Sbjct: 1023 MPDYVVYHELIMTAKEYMQCVTAVDAIWLAELGPMFYSIKESKQS 1067
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/71 (23%), Positives = 39/71 (54%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
++ ++ + +VR QL +M+ +++ ++++ S+ +RK I S YF++ A+ G Y
Sbjct: 942 YLHVKALKKVREVRAQLKEIMQDLKLPLISNGSEWDIVRKCICSAYFHNAARLKGIGEYV 1001
Query: 288 TVKHNQXVMIH 256
V+ +H
Sbjct: 1002 NVRTGIPCFLH 1012
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determination
protein MOG-1 protein.
Length = 1131
Score = 53.2 bits (122), Expect = 1e-07
Identities = 20/45 (44%), Positives = 33/45 (73%)
Frame = -1
Query: 232 LPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDS 98
+P +V+YHEL+ T+KE+M+ VT +++ WL E+ P +Y KE + S
Sbjct: 1023 MPDYVVYHELIMTAKEYMQCVTAVDAIWLAELGPMFYSIKESKQS 1067
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/71 (23%), Positives = 39/71 (54%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
++ ++ + +VR QL +M+ +++ ++++ S+ +RK I S YF++ A+ G Y
Sbjct: 942 YLHVKALKKVREVRAQLKEIMQDLKLPLISNGSEWDIVRKCICSAYFHNAARLKGIGEYV 1001
Query: 288 TVKHNQXVMIH 256
V+ +H
Sbjct: 1002 NVRTGIPCFLH 1012
>AC132211-3|AAN01436.1| 330|Caenorhabditis elegans Hypothetical
protein Y108F1.5 protein.
Length = 330
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNI 355
FV YR RA +VR QLV L++R EIE V+S T +
Sbjct: 114 FVNYRGLMRADNVRSQLVRLLKRFEIEKVSSRGHYTKV 151
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical protein
C06E1.10 protein.
Length = 1148
Score = 33.9 bits (74), Expect = 0.066
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 250 SALFEDLPRWVIYHELV-FTSKEFMRQVTEIESKWLLEVAPHY 125
S +F + P +VIY ELV K+ M V ++ +WL +A Y
Sbjct: 948 SVVFTEEPEFVIYQELVQVNEKKLMTSVCAVDKEWLSRLAESY 990
>AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 3 protein.
Length = 666
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 181 MRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTL 71
M ++ I++KWL E H + + LEDS N T+
Sbjct: 621 MEFISPIQTKWLAEPIYHDFDAPWLEDSENPSTKNTI 657
>Z50070-8|CAA90397.1| 263|Caenorhabditis elegans Hypothetical
protein F43G6.8 protein.
Length = 263
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 166 EIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSAKN 53
E+ESK + + HYY S+ + + ++ L + A N
Sbjct: 103 EMESKIMADFIDHYYDSRNITEEDRDELQDKLDEEAAN 140
>AC024201-17|AAO12395.1| 95|Caenorhabditis elegans Hypothetical
protein Y71F9B.13c protein.
Length = 95
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 315 KFSKGGHYKTVKHNQXVMIHLIVLYLKT-FHD 223
KF+KGGHY + + V I L YL T HD
Sbjct: 9 KFAKGGHYPYNRADNIVNIGLQQTYLPTCLHD 40
>AC024201-16|AAF36025.1| 192|Caenorhabditis elegans Hypothetical
protein Y71F9B.13b protein.
Length = 192
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 315 KFSKGGHYKTVKHNQXVMIHLIVLYLKT-FHD 223
KF+KGGHY + + V I L YL T HD
Sbjct: 106 KFAKGGHYPYNRADNIVNIGLQQTYLPTCLHD 137
>AC024201-15|AAF36024.1| 220|Caenorhabditis elegans Hypothetical
protein Y71F9B.13a protein.
Length = 220
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 315 KFSKGGHYKTVKHNQXVMIHLIVLYLKT-FHD 223
KF+KGGHY + + V I L YL T HD
Sbjct: 134 KFAKGGHYPYNRADNIVNIGLQQTYLPTCLHD 165
>AC006684-2|AAF39959.1| 116|Caenorhabditis elegans Hypothetical
protein T02H6.10 protein.
Length = 116
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 216 FTMSLYLHLKNL*DKSPKLRANGYWR*RLIITNQRN 109
FT+ LH ++ SPKL YW R I+ N N
Sbjct: 10 FTLVATLHAQS---GSPKLNCKAYWLTRYILDNNAN 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,730,103
Number of Sequences: 27780
Number of extensions: 170478
Number of successful extensions: 398
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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