Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0022.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 102 2e-22
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 100 5e-22
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 83 8e-17
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 69 2e-12
At5g14900.1 68418.m01748 helicase associated (HA2) domain-contai... 64 7e-11
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 60 6e-10
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 60 1e-09
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 58 3e-09
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 52 2e-07
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 50 7e-07
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 38 0.004
At2g43690.1 68415.m05431 lectin protein kinase, putative similar... 29 2.3
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 4.0
At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 28 4.0
At3g59700.1 68416.m06661 lectin protein kinase, putative similar... 27 5.3
At2g43700.1 68415.m05432 lectin protein kinase family protein co... 27 5.3
At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3) ident... 27 7.0
At3g55550.1 68416.m06168 lectin protein kinase, putative similar... 27 7.0
At3g45440.1 68416.m04905 lectin protein kinase family protein co... 27 7.0
At3g45420.1 68416.m04903 lectin protein kinase family protein co... 27 7.0
At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1 p... 27 7.0
At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein ... 27 9.3
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 27 9.3
At1g20795.1 68414.m02604 F-box family protein contains Pfam prof... 27 9.3
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 102 bits (244), Expect = 2e-22
Identities = 48/99 (48%), Positives = 66/99 (66%)
Frame = -1
Query: 355 KKGYXVWLFLSYSKIFKRWSL*NCKT*SXSYDTSNSALFEDLPRWVIYHELVFTSKEFMR 176
+K F +K+ K S K + NS L + LPRWV+YHELV TSKE+MR
Sbjct: 945 RKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMR 1004
Query: 175 QVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSA 59
QVTE++ +WL+E+APHYY+ K++ED+ +KKMPK GK+A
Sbjct: 1005 QVTELKPEWLIELAPHYYQLKDVEDAASKKMPKGAGKAA 1043
Score = 79.8 bits (188), Expect = 9e-16
Identities = 37/78 (47%), Positives = 54/78 (69%)
Frame = -2
Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKF 310
QW ++Q RS RA D+R+QL L+ERVEI++ ++L++ ++RK+I +G+F H AK
Sbjct: 901 QWCYEN-YIQVRSMKRARDIRDQLEGLLERVEIDISSNLNELDSVRKSIVAGFFPHTAKL 959
Query: 309 SKGGHYKTVKHNQXVMIH 256
K G Y+TVKH Q V IH
Sbjct: 960 QKNGSYRTVKHPQTVHIH 977
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 100 bits (240), Expect = 5e-22
Identities = 40/63 (63%), Positives = 56/63 (88%)
Frame = -1
Query: 250 SALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTL 71
S L + LPRWV+YH+LV TSKE+MRQVTE++ +WL+E+APHYY+ K++ED+T+KKMPKT
Sbjct: 1046 SGLSQVLPRWVVYHQLVLTSKEYMRQVTELKPEWLIEIAPHYYQLKDVEDATSKKMPKTS 1105
Query: 70 GKS 62
G++
Sbjct: 1106 GRA 1108
Score = 78.2 bits (184), Expect = 3e-15
Identities = 37/78 (47%), Positives = 53/78 (67%)
Frame = -2
Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKF 310
QW ++Q RS RA D+R+QL L+ERVEI++ ++ ++ +IRK+I +G+F H AK
Sbjct: 967 QWCYEN-YIQVRSMKRARDIRDQLEGLLERVEIDVSSNANELDSIRKSIVAGFFPHTAKL 1025
Query: 309 SKGGHYKTVKHNQXVMIH 256
K G Y+TVKH Q V IH
Sbjct: 1026 QKNGSYRTVKHPQTVHIH 1043
>At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q14562
ATP-dependent helicase DDX8 (RNA helicase HRH1) (DEAH-box
protein 8) {Homo sapiens}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 883
Score = 83.4 bits (197), Expect = 8e-17
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Frame = -1
Query: 355 KKGYXVWLFLSYSKIFKRWSL*NCKT*SXSYDTSNSALFEDLP-RWVIYHELVFTSKEFM 179
KK F +K+ K S K Y NS LF P +W++YHELV T+KE+M
Sbjct: 761 KKAILAGFFPHSAKLQKNGSYRRVKEPQTVYVHPNSGLFGASPSKWLVYHELVLTTKEYM 820
Query: 178 RQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGKSA 59
R TE++ +WL+E+APHYYK K++ED+ KK + + +++
Sbjct: 821 RHTTEMKPEWLIEIAPHYYKLKDIEDTRPKKTQRRIEEAS 860
Score = 70.1 bits (164), Expect = 8e-13
Identities = 32/78 (41%), Positives = 50/78 (64%)
Frame = -2
Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKF 310
QW K F+Q +S RA D+R+QL+ L+ ++ +E+ ++ +D I+KAI +G+F H AK
Sbjct: 717 QWCCEK-FIQSKSMKRARDIRDQLLGLLNKIGVELTSNPNDLDAIKKAILAGFFPHSAKL 775
Query: 309 SKGGHYKTVKHNQXVMIH 256
K G Y+ VK Q V +H
Sbjct: 776 QKNGSYRRVKEPQTVYVH 793
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative similar
to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00575:
S1 RNA binding domain
Length = 1168
Score = 68.9 bits (161), Expect = 2e-12
Identities = 29/60 (48%), Positives = 43/60 (71%)
Frame = -1
Query: 265 YDTSNSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKK 86
Y +SALF+ P WVIYH+LV T+KE+MR+VT I+ KWL+E+AP ++K + + +K
Sbjct: 1084 YIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRK 1143
Score = 68.5 bits (160), Expect = 2e-12
Identities = 32/71 (45%), Positives = 50/71 (70%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
F+Q RS RA DVR+QL+S+M++ ++++VT+ + T IRKAI +G+F+H A+ Y+
Sbjct: 1016 FIQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYR 1075
Query: 288 TVKHNQXVMIH 256
T+ NQ V IH
Sbjct: 1076 TLVENQPVYIH 1086
>At5g14900.1 68418.m01748 helicase associated (HA2)
domain-containing protein similar to SP|P53131 Pre-mRNA
splicing factor RNA helicase PRP43 (Helicase JA1)
{Saccharomyces cerevisiae}; contains Pfam profile
PF04408: Helicase associated domain (HA2)
Length = 301
Score = 63.7 bits (148), Expect = 7e-11
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = -1
Query: 229 PRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKM 83
P WV+Y+E VFTS+ F+R VT I +WL++VAPHYYK S K++
Sbjct: 231 PEWVVYNEYVFTSRNFIRTVTHIRGEWLVDVAPHYYKLANFPSSEAKRV 279
Score = 57.6 bits (133), Expect = 4e-09
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = -2
Query: 486 WXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVT----SLSDDTNIRKAIXSGYFYHI 319
W K F+ YR+ A VREQLV +M R +I++ + S NIRKA+ +GYF +
Sbjct: 141 WCCTK-FINYRAMKSAVSVREQLVRIMLRFQIKLCSPDFNSRDYYVNIRKALLAGYFMQV 199
Query: 318 AKFSKGGHYKTVKHNQXVMIHL 253
A + GHY T + ++HL
Sbjct: 200 AHLERTGHYLTFRDKDDQVVHL 221
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 60.5 bits (140), Expect = 6e-10
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTS--LSDD--TNIRKAIXSGYFYHIAKFSKG 301
FV R+ A +VR+QLV +M R ++M ++ S D NIRKA+ +GYF +A +
Sbjct: 579 FVNNRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERT 638
Query: 300 GHYKTVKHNQXVMIH 256
GHY TVK NQ V +H
Sbjct: 639 GHYLTVKDNQVVHLH 653
Score = 54.8 bits (126), Expect = 3e-08
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = -1
Query: 229 PRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGK 65
P WVIY+E V T++ F+R VT+I +WL++VA HYY + K+ + L K
Sbjct: 662 PEWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHYYDLSNFPNCEAKRALEKLYK 716
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 59.7 bits (138), Expect = 1e-09
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTS--LSDD--TNIRKAIXSGYFYHIAKFSKG 301
F+ R+ A +VR+QLV +M R ++M ++ S D NIRKA+ +GYF +A +
Sbjct: 575 FINNRAMKSADNVRQQLVRIMSRFNLKMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERT 634
Query: 300 GHYKTVKHNQXVMIH 256
GHY TVK NQ V +H
Sbjct: 635 GHYLTVKDNQVVHLH 649
Score = 56.8 bits (131), Expect = 8e-09
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = -1
Query: 229 PRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGK 65
P WVIY+E V TS+ F+R VT+I +WL++VA HYY + K++ + L K
Sbjct: 658 PEWVIYNEYVLTSRNFIRTVTDIRGEWLVDVASHYYDLSNFPNCEAKRVIEKLYK 712
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 58.0 bits (134), Expect = 3e-09
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = -1
Query: 265 YDTSNSALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKE 110
Y +S LF P+WV+Y +V T +++MR V I WL EVAPH+Y++++
Sbjct: 648 YIHPSSVLFRVNPKWVVYQSIVSTERQYMRNVVTINPSWLTEVAPHFYQNRQ 699
Score = 47.6 bits (108), Expect = 5e-06
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = -2
Query: 489 QWXLXKPFVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKF 310
QW K F+ Y+S + ++R+QL + R+ I + + D +RKA+ +G+F + +
Sbjct: 572 QWCY-KNFLNYQSMKKVVEIRDQLKRIARRLGITLKSCDGDMEAVRKAVTAGFFANACRL 630
Query: 309 S--KGGHYKTVKHNQXVMIH 256
G YKT++ ++ V IH
Sbjct: 631 EPHSNGVYKTIRGSEEVYIH 650
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Frame = -1
Query: 289 NCKT*SXSYDTSNSALFE--DLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKS 116
NC+T + +SAL+ P +V+YHEL+ T+KE+M+ T +E WL E+ P ++
Sbjct: 1094 NCRTGMPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATSVEPHWLAELGPMFFSV 1153
Query: 115 KELEDS 98
K+ + S
Sbjct: 1154 KDSDTS 1159
Score = 43.6 bits (98), Expect = 8e-05
Identities = 20/71 (28%), Positives = 40/71 (56%)
Frame = -2
Query: 468 FVQYRSXXRAXDVREQLVSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSKGGHYK 289
++Q + +A +VR QL+ ++++++IE+ + D +RKAI S YF++ A+ G Y
Sbjct: 1034 YLQVKGLRKAREVRSQLLDILKQLKIELRSCGPDWDIVRKAICSAYFHNSARLKGVGEYV 1093
Query: 288 TVKHNQXVMIH 256
+ +H
Sbjct: 1094 NCRTGMPCHLH 1104
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 50.4 bits (115), Expect = 7e-07
Identities = 21/47 (44%), Positives = 35/47 (74%)
Frame = -1
Query: 250 SALFEDLPRWVIYHELVFTSKEFMRQVTEIESKWLLEVAPHYYKSKE 110
S LF P VI++EL+ TSK++++ +T I+S WL E+APH++++ E
Sbjct: 671 SVLFRAKPECVIFNELMQTSKKYIKNLTIIDSLWLSELAPHHFQTAE 717
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 37.9 bits (84), Expect = 0.004
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 232 LPRWVIYHELVFTSKEFMRQVTEIESKWLLEV 137
+P +V+YHEL+ T++ FMR V ++ W+ +
Sbjct: 608 MPNYVVYHELISTTRPFMRNVCAVDMAWVAPI 639
>At2g43690.1 68415.m05431 lectin protein kinase, putative similar to
receptor-like kinase LECRK1 [Arabidopsis thaliana]
gi|2150023|gb|AAB58725
Length = 664
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 205 LVFTSKEFMRQVTEIESKWLLEVAPHYYKSKELEDSTN 92
+VF K +++ E+ +W +E PH + KEL ++TN
Sbjct: 299 IVFFYKRH-KKLLEVLEEWEVECGPHRFSYKELFNATN 335
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 RQVTEIESKWLLEVAPHYYKSKELEDSTNK-KMPKTLGK 65
++V E+ +W ++ PH + KEL ++T K + LGK
Sbjct: 273 KKVKEVLEEWEIQYGPHRFAYKELLNATKDFKEKQLLGK 311
>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 523
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 RQVTEIESKWLLEVAPHYYKSKELEDSTNK-KMPKTLGK 65
++V E+ +W ++ PH + KEL ++T K + LGK
Sbjct: 305 KKVKEVLEEWEIQCGPHRFSYKELFNATKGFKEKQLLGK 343
>At3g59700.1 68416.m06661 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 661
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 RQVTEIESKWLLEVAPHYYKSKELEDSTNK-KMPKTLGK 65
++V E+ +W ++ PH + KEL ++T K + LGK
Sbjct: 308 KKVKEVLEEWEIQYGPHRFAYKELFNATKGFKEKQLLGK 346
>At2g43700.1 68415.m05432 lectin protein kinase family protein
contains pfam domains PF00139: Legume lectins beta
domain and PF00069: Protein kinase domain
Length = 658
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 178 RQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGK 65
++V E+ +W ++ PH + KEL +T K + LGK
Sbjct: 306 KKVKEVLEEWEIQCGPHRFAYKELFKAT-KGFKQLLGK 342
>At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3)
identical to receptor lectin kinase 3 [Arabidopsis
thaliana] gi|4100060|gb|AAD00733
Length = 659
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 178 RQVTEIESKWLLEVAPHYYKSKELEDSTNK-KMPKTLGK 65
++V E+ +W ++ PH + KEL ++T K + LGK
Sbjct: 303 KKVKEVLEEWEIQNGPHRFSYKELFNATKGFKEKQLLGK 341
>At3g55550.1 68416.m06168 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 684
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -1
Query: 220 VIYHELVFTSKEFMRQVTEIE--SKWLLEVAPHYYKSKELEDSTN 92
+I+ LV S +R+V + + +W L+ PH + +EL+ +TN
Sbjct: 300 LIFAVLVAASLFVVRKVKDEDRVEEWELDFGPHRFSYRELKKATN 344
>At3g45440.1 68416.m04905 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and PS00108: Serine/Threonine protein
kinases active-site signature, PROSITE:PS00108
Length = 669
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 178 RQVTEIESKWLLEVAPHYYKSKELEDSTN 92
R+ EI +W E PH + K+L +TN
Sbjct: 312 RKYAEIREEWEKEYGPHRFSYKDLYIATN 340
>At3g45420.1 68416.m04903 lectin protein kinase family protein
contains Serine/Threonine protein kinases active-site
signature, Prosite:PS00108
Length = 667
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 178 RQVTEIESKWLLEVAPHYYKSKELEDSTN 92
++ E++ W E PH Y K L +TN
Sbjct: 320 KKYAEVKESWEKEYGPHRYSYKSLYKATN 348
>At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1
protein annotation temporarily based on supporting cDNA
gi|23452833|gb|AF543710.1|
Length = 533
Score = 27.1 bits (57), Expect = 7.0
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = -1
Query: 259 TSNSALFEDLPRWVIYHELVFTSKEFM----RQVTEIESKWLLEVAPH---YYKSKELED 101
TS SA + + W+ YH+++ S F+ + T SK +LE P Y++KELE+
Sbjct: 134 TSTSAGLDQILPWMFYHKVLGVSTFFLFVEGKAATPSISK-VLESIPGVKVIYRTKELEE 192
Query: 100 STNK 89
K
Sbjct: 193 KQAK 196
>At4g12240.1 68417.m01941 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 364
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 432 VREQLVSLMERVEIEMVTSLSDDTN 358
++E LV +M++ E+E V +SDD++
Sbjct: 214 LKEHLVEVMDKREVECVVLVSDDSD 238
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118: TCP-1/cpn60
chaperonin family
Length = 1791
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 181 MRQVTEIESKWLLEVAPHYYKSKELEDSTNKKMPKTLGK 65
++QVT+ E + ++ AP Y+ K L +S + K P L K
Sbjct: 1552 IKQVTKTELESFIKFAPAYF--KYLSESISTKSPTCLAK 1588
>At1g20795.1 68414.m02604 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 418
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 417 VSLMERVEIEMVTSLSDDTNIRKAIXSGYFYHIAKFSK 304
+ L ++V++ M+T++ DD N+R HI+ K
Sbjct: 364 IELNKKVDVRMITTVRDDYNVRMITMVRDDKHISTLKK 401
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,116,417
Number of Sequences: 28952
Number of extensions: 156660
Number of successful extensions: 345
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -