Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0021.Seq
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    31   0.091
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   4.5  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    24   7.9  

>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 30.7 bits (66), Expect = 0.091
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 320 DKADI*KMXSPVLDHAICKSYPIHQN*RLRTRGPPSIGFDLIKALIP 180
           D  D+  +   ++D    K Y IH +  L  +  PS GF +I++L+P
Sbjct: 380 DMDDVECICVSLIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 245 FDELDNFCRSHGQVPATASFKCLPYQL 325
           +DEL +  R+  ++  T  F+C+P +L
Sbjct: 397 YDELVDSARAGDRIEVTGIFRCVPVRL 423


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 76  NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 180
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 313 QTFERCXRRYLTMRSAKVIQFIKINDFGREALRR 212
           +TFE+  RR LT+ S+     +++ + G+E   R
Sbjct: 35  KTFEKAHRRSLTLLSSFTSSMLELPNNGKEENHR 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,513,808
Number of Sequences: 5004
Number of extensions: 26543
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)