Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0021.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   4e-04
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   8e-04
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 32   0.21 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 32   0.21 
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.63 
SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)                27   7.8  

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   PVVICLSQRLSHACLSASRIKAIPRMA 82
           PVVICLSQRLSHACLS S      RMA
Sbjct: 135 PVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +2

Query: 2   PVVICLSQRLSHACLSASRIKAIPRMA 82
           PVVICLSQRLSHACLS S      RMA
Sbjct: 111 PVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
           L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 9    LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 143
            L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -3

Query: 407 FLRLPXRNRTLIPRYP 360
           FLRLP RNRTLI R+P
Sbjct: 225 FLRLPLRNRTLILRHP 240


>SB_24480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 67  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDG 183
           D  NG+I  F    +    W   + LE IH + TL  DG
Sbjct: 263 DFGNGTISSFTGNITRFNVWTLYISLEFIHNMATLVEDG 301


>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
          Length = 420

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 28  IKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIR-TLTSDGMSAFIRS 204
           +KPC S   P      + +++        +VT+   V  + IH  R TL+SD M A   S
Sbjct: 35  LKPCSSNYAP---SEQSYNVFLAPLYTRATVTYKGPVQSQGIHLNRYTLSSDNMKANNIS 91

Query: 205 KPIDG 219
           +P+DG
Sbjct: 92  RPLDG 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,331,329
Number of Sequences: 59808
Number of extensions: 192353
Number of successful extensions: 468
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)