Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0021.Seq
         (409 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051711-1|AAK93135.1|  585|Drosophila melanogaster LD24837p pro...    28   5.4  
AE014296-1997|AAN11879.1|  585|Drosophila melanogaster CG11660-P...    28   5.4  
AE014296-1996|AAF50033.1|  585|Drosophila melanogaster CG11660-P...    28   5.4  

>AY051711-1|AAK93135.1|  585|Drosophila melanogaster LD24837p
           protein.
          Length = 585

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 361 RDNHGSRRNYHRKLIRQTFERCXRRYLTMRSAKV 260
           R  HG  ++  RK++R   E+  R YL MR+A V
Sbjct: 253 RFRHGYCKHNPRKMVRTWAEKEMRNYLRMRNAGV 286


>AE014296-1997|AAN11879.1|  585|Drosophila melanogaster CG11660-PB,
           isoform B protein.
          Length = 585

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 361 RDNHGSRRNYHRKLIRQTFERCXRRYLTMRSAKV 260
           R  HG  ++  RK++R   E+  R YL MR+A V
Sbjct: 253 RFRHGYCKHNPRKMVRTWAEKEMRNYLRMRNAGV 286


>AE014296-1996|AAF50033.1|  585|Drosophila melanogaster CG11660-PA,
           isoform A protein.
          Length = 585

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 361 RDNHGSRRNYHRKLIRQTFERCXRRYLTMRSAKV 260
           R  HG  ++  RK++R   E+  R YL MR+A V
Sbjct: 253 RFRHGYCKHNPRKMVRTWAEKEMRNYLRMRNAGV 286


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,729
Number of Sequences: 53049
Number of extensions: 281230
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)