Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0020.Seq
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    38   7e-04
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    27   1.2  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   4.9  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    24   6.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   6.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    24   6.5  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    24   8.6  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 37.5 bits (83), Expect = 7e-04
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 110 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRS 232
           +V NF AGPA +   V E    +  NF+  G+ + E SHRS
Sbjct: 6   EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRS 46


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 364 LSLKEQLQIDQDPHQLXTALCSCPVHLISFAQ 269
           L+LK+ + I  + H L  A+CS     ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 111 LDIFTYLFI*LIPTLHYFTKRH 46
           ++ FT LFI  +PT  YF K H
Sbjct: 581 VNTFTNLFIPAVPTDSYFFKYH 602


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 254 HLASCMLKNDDLFPIN 207
           +L +C LKN D FP++
Sbjct: 116 YLTNCNLKNKDTFPVS 131


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 223  TCFQ*TNSRIFKICQFILNNFIDFFWQ 143
            TCF  T S+ +  CQ +LN   +F++Q
Sbjct: 1379 TCFFVTRSKKYPYCQVVLNE-PNFYFQ 1404


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 140  KLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKL 250
            KLP+++  IIK  + + +    S L+  H +S  MKL
Sbjct: 991  KLPKKLNSIIKGIMESIKKEQFSCLQ-MHSASAMMKL 1026


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 202 SRIFKICQFILNNFIDFFWQFS 137
           SRI ++  ++  NF+ F+W+ S
Sbjct: 278 SRISRLPNYLTVNFVRFYWKAS 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,326,605
Number of Sequences: 5004
Number of extensions: 23460
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)