Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0020.Seq
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                           45   2e-05
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900...    28   2.0  
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426...    28   2.6  
08_02_0871 - 22075553-22075731,22075815-22076028,22076309-220763...    27   3.5  
06_01_0746 + 5580755-5582119                                           27   3.5  
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322...    27   3.5  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    27   6.1  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = +2

Query: 113 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTY 241
           V+NF AGPA LP  V +  + EL ++  SG+S++E SHR   +
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEF 107



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 271 VRNLLDVPDNYKVXXXXXXXXXQFAAVPLNL 363
           +R LL VPD ++V         QFAA PLNL
Sbjct: 118 LRALLAVPDTHEVLFLQGGATSQFAAAPLNL 148


>01_04_0143 +
           16689471-16689498,16689687-16689818,16689974-16690013,
           16690214-16690280,16690349-16690431,16690755-16690821,
           16692741-16692821,16693696-16693791,16694172-16694198
          Length = 206

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = -1

Query: 358 LKEQLQIDQDPHQLXTALCSCPVHLISFAQHPEFRI*LHVC*RTMTCFQ*TNSRIFKICQ 179
           +KE  ++  +   +  + CS  +   SF  H E    LH C + +TC    +S +   C 
Sbjct: 44  IKEMFKLGFEVLHIYISTCS-KLERYSFCYHLE-EADLHQCHQILTCTINGSSLVMIWCC 101

Query: 178 FILNNFID-FFWQFS-RSSAKIKHFRHFHLFIYLI 80
            + NN  + +F  F+     K K + HF  ++ LI
Sbjct: 102 HLANNSANCYFLHFTIVQHLKKKFYFHFQDYVDLI 136


>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
            4263151-4263315,4263416-4263544,4263758-4263858,
            4264527-4264596,4265080-4265331,4265828-4265897,
            4266281-4266341,4266916-4267003,4267746-4267830,
            4268168-4268234,4268442-4268559,4268843-4268923,
            4269022-4269267,4269670-4269771,4269847-4269914,
            4270040-4270171,4270283-4270430,4270504-4270790,
            4270920-4271067,4271156-4271331,4271407-4271518,
            4271614-4271667,4273134-4273244,4273317-4273478,
            4273627-4273814,4273948-4274137,4274297-4274464,
            4274832-4274912
          Length = 1359

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +2

Query: 98   VKMSKVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNA 256
            +K SK+       A +  +   +++N ++  E  G+++L  +HR ST MK+++
Sbjct: 1273 LKSSKILCLDECTANVDNQTASLLQNTISA-ECKGMTVLTIAHRISTVMKMDS 1324


>08_02_0871 -
           22075553-22075731,22075815-22076028,22076309-22076351,
           22076557-22076616,22077522-22077593,22078163-22078368,
           22078782-22078837,22079540-22079777,22079908-22080081,
           22080157-22080292,22080822-22080853,22081563-22081619,
           22081713-22081965,22082057-22082145,22082590-22082643,
           22084016-22084207,22085338-22085499
          Length = 738

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 190 KICQFILNNFIDF--FWQFSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTLSFSDVSQYN 17
           KI Q + +  I +  +W++S SS    HFRH  L   + +S +  +    L+++   QY 
Sbjct: 128 KIAQSLQSKGISYIMYWRYSLSSYAASHFRH-SLLSVVRSSCSHAWDAFQLAYASFEQYC 186

Query: 16  V 14
           V
Sbjct: 187 V 187


>06_01_0746 + 5580755-5582119
          Length = 454

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 98  VKMSKVFNFGAGPAKLPEEVYEIIKNELTN 187
           ++ S + + GA    LPE+VYE +K E  +
Sbjct: 317 LRSSTIIDSGASITTLPEDVYEAVKAEFVS 346


>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
            32233-33714
          Length = 1189

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -1

Query: 148  WQFSRSSAKIKHFRH----FHLFIYLINSYTTLFYQTTLSFSDVSQYNVVMSA 2
            W +SR SA I +F +    F + ++L  +YT+   QT  +   +S YNV  ++
Sbjct: 899  WCYSRISAMICYFFYKNITFGVTLFLYEAYTSFSGQTFYNDWALSTYNVFFTS 951


>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 273  HNILNFAFSFMYVEER*LVSNKLIPEFSKFVNSFLIIS*TSSGNLAGPAPK-LNTLDIFT 97
            HN++   F+ M  E R L +N +   FSK +     +   S+        K L T DIF 
Sbjct: 1805 HNVMKKVFALMLAEFRKLGANVIFANFSKIIIDTGKVDLLSARAYCDSLLKTLQTRDIFE 1864

Query: 96   YLFI*LIPTLHYF 58
            ++    +  LHY+
Sbjct: 1865 WV---ELEPLHYW 1874


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,856,142
Number of Sequences: 37544
Number of extensions: 123223
Number of successful extensions: 272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)