Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0020.Seq
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-04
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)          27   3.6  
SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    26   8.3  
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +2

Query: 110 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLE 217
           KV NF  GPAKLPE V +  + E  N+ N GIS++E
Sbjct: 5   KVINFAPGPAKLPEVVLKKAQEEFLNYGNLGISVME 40


>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
          Length = 336

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -1

Query: 175 ILNNFIDFFW----QFSRSSAKIKHFRHFHLFI 89
           +LNN   F W    QF+  + ++K F H H +I
Sbjct: 21  LLNNIRSFLWITIQQFTSRTLQVKLFEHLHSYI 53


>SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 364 LSLKEQLQIDQDPHQLXTAL-CSCPVHLISFAQHP 263
           +S+ +  ++D  PHQ  TAL  S P  LI  + HP
Sbjct: 11  ISISDLTELDLQPHQTPTALENSNPSPLIPASHHP 45


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 244 HVC*RTMTCFQ*TNSRIFKICQFILNNFIDFF 149
           H+  R   CF   N ++   C  +LN  ++FF
Sbjct: 822 HIADREEKCFIGVNGKLMVKCSILLNGNLEFF 853


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 161  EIIKNELTNFE-NSGISLLE-TSHRSSTYMKLNAKFRMLCETY*MYRTTT 304
            E+ K E  +F   +GI +L  TS R  + + + +KF  +C+ Y     TT
Sbjct: 914  EVNKQESHSFTVTTGIRVLSITSQRIRSQLLMKSKFERICDRYPNITATT 963


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,451,173
Number of Sequences: 59808
Number of extensions: 149001
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)