Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0020.Seq
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...    52   1e-07
AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical ...    29   0.79 
U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    27   5.5  
Z81583-1|CAB04671.1|  234|Caenorhabditis elegans Hypothetical pr...    26   7.3  
U80843-11|AAB37970.1|  296|Caenorhabditis elegans Hypothetical p...    26   7.3  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +2

Query: 119 NFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTY 241
           NF AGPAKLPEEV   ++ E  NF N G+S++E SHRS  +
Sbjct: 9   NFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEF 49



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 256 EIQDVVRNLLDVPDNYKVXXXXXXXXXQFAAVPLNL 363
           E   ++R L++VPDN+++         QFAA+PLNL
Sbjct: 55  ETISLIRELMNVPDNFEILFMQGGGTGQFAAIPLNL 90


>AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical
           protein T05E7.3 protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -1

Query: 142 FSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTLSFSDVSQYNVVMS 5
           F+RSS +++      LFI + N   + F +++LS+ DV     V+S
Sbjct: 717 FARSSGELEKNYIAELFIKITNPKASRFSESSLSWKDVKMSKTVLS 762


>U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical
           protein F42C5.2 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 81  LIPTL-HYFTKRHYRSQTCRSTMWLCLP 1
           L+PT+ HYF  +H+         W+CLP
Sbjct: 228 LVPTIIHYFYLQHFSVPFDPDVTWVCLP 255


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 193 FKICQFILNNFIDFFWQFSRSSAKIKHFRHF 101
           F+I + IL+    FFW F+   A + H  HF
Sbjct: 505 FRIPKLILDVLWIFFWIFTHFFAPLVHLLHF 535


>AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 208 TNSRIFKICQFILNNFIDFFWQFSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTL 44
           ++S IF     +L++F    +Q    S  I H +H H   Y +   T  F Q+ L
Sbjct: 239 SHSDIFNYMDEVLSHFPCNLFQRGVLSKAINHAKHCHKNFYALGFLTDKFRQSIL 293


>Z81583-1|CAB04671.1|  234|Caenorhabditis elegans Hypothetical
           protein T02G6.1 protein.
          Length = 234

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 187 ICQFILNNFIDFFWQFSRSSAK 122
           +CQF++N   DF   FS+   K
Sbjct: 200 VCQFLINTIADFLTNFSKKWIK 221


>U80843-11|AAB37970.1|  296|Caenorhabditis elegans Hypothetical
           protein C32B5.15 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 196 IFKICQFILNNFIDFFWQFSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTLSFSD 32
           I  + Q  L + I FFW+   S  KI HF +     ++I S         ++F D
Sbjct: 146 ILNLHQTHLKSNIIFFWKQGMSQQKIHHFSNIRNVNHIILSEMVKLDTIPITFLD 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,391,290
Number of Sequences: 27780
Number of extensions: 129891
Number of successful extensions: 352
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)