Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0020.Seq
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.21 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   2.6  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.21
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 146 PEEVYEIIKNELTNFENSGISLLETSHRSSTYMKL 250
           P + Y++  N +TNF+NS I  L+  H   T  K+
Sbjct: 152 PFKEYQMNGNNITNFKNSNIFQLK-QHMRDTMNKI 185


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 98   VKMSKVFNFGAGPAKLPEEVYEI 166
            V + +  N G GP K+PE   +I
Sbjct: 1672 VALQQAANTGGGPDKIPETAEDI 1694


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 98   VKMSKVFNFGAGPAKLPEEVYEI 166
            V + +  N G GP K+PE   +I
Sbjct: 1668 VALQQAANTGGGPDKIPETAEDI 1690


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 246 FMYVEER*LVSNKLIPEFSKFVN 178
           F+ + +  L+ + LI +FSKF N
Sbjct: 82  FLLLNDPELIKDILIRDFSKFAN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,656
Number of Sequences: 438
Number of extensions: 1557
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)