Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0019.Seq
         (451 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      23   1.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   2.3  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   2.3  

>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 290 CTTIIQFS-LNVWHVE*TCSQCSES 219
           C + IQ S   +W +E +C  C ES
Sbjct: 69  CASYIQVSGSKIWQMERSCMCCQES 93


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 212 TYFGFTF*TSDFRANFICNLISFYFI 135
           TYFG T   +  + N  CN I  +++
Sbjct: 305 TYFGKTGRKTVLKTNKYCNFIILFYL 330


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 210 LFWIYVLNVRFPG*FHL*SYIFLFYMS 130
           L WI V  +   G  ++  Y+F F++S
Sbjct: 256 LLWITVTFILLVGDSYIVMYVFFFHLS 282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,598
Number of Sequences: 336
Number of extensions: 1775
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)