Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0019.Seq
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445...    29   2.3  
07_01_0589 - 4381188-4381433,4381509-4381604,4381673-4381858,438...    27   9.2  

>12_01_0551 +
           4446937-4447353,4449141-4450013,4451206-4451244,
           4452339-4452581
          Length = 523

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -2

Query: 396 TXNXAIKDLSSIMAILMSTTARVIKSLLIEEKGLMMYYYYSVLT*CMACRINV 238
           T N A KDL +++  ++S T+  IKS    +K L M   YS+   C+ C + +
Sbjct: 214 TNNNARKDLRTLVDGILSRTSIYIKS----DKELDMMNIYSICHTCLNCLVEL 262


>07_01_0589 -
           4381188-4381433,4381509-4381604,4381673-4381858,
           4382704-4382825,4384127-4384189,4384777-4384930,
           4387354-4387381,4387784-4387837,4387950-4388294,
           4388382-4388638
          Length = 516

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 287 TTIIQFSLNVWHVE*TCSQCSESAVTYFGFTF*T 186
           T +I   L V+++  TCS C + A+    FTF T
Sbjct: 446 TRMIDEQLLVYYLVSTCSMCGQLALCIHDFTFLT 479


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,586,654
Number of Sequences: 37544
Number of extensions: 131726
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)