Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0019.Seq
         (451 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY129444-1|AAM76186.1|  671|Drosophila melanogaster LD18443p pro...    29   2.9  
AE014296-353|AAF47565.1|  671|Drosophila melanogaster CG13933-PA...    29   2.9  

>AY129444-1|AAM76186.1|  671|Drosophila melanogaster LD18443p
           protein.
          Length = 671

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 150 IFLFYMSFKN*RKFNCCNSNSNDFHVCNLSSKRFILQ*LTLINYTYRKKK 1
           I LFY++  +   FNC  S  N F+V  + SK+   Q + LI+  YR+ +
Sbjct: 584 IHLFYLTMHHEPLFNCLKSLHN-FYVAQVPSKK-TEQLIALISSLYRRPR 631


>AE014296-353|AAF47565.1|  671|Drosophila melanogaster CG13933-PA
           protein.
          Length = 671

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 150 IFLFYMSFKN*RKFNCCNSNSNDFHVCNLSSKRFILQ*LTLINYTYRKKK 1
           I LFY++  +   FNC  S  N F+V  + SK+   Q + LI+  YR+ +
Sbjct: 584 IHLFYLTMHHEPLFNCLKSLHN-FYVAQVPSKK-TEQLIALISSLYRRPR 631


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,056,504
Number of Sequences: 53049
Number of extensions: 247869
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)