Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0018.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   1.1  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   1.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   2.6  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 323 PAWKNAVRWTSVVRIIGSVTSSPDRPPI 240
           P W  A  W S+ R     TS+P  PPI
Sbjct: 79  PQWPFA--WGSLXRSSSPQTSAPTGPPI 104


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 144 MVLTSTTRRLSIPYTFILLSTTLPMAHVPE*WNRWTV 254
           ++L+S  R     YT+I L  ++ M  +   +N WT+
Sbjct: 38  VILSSIDRPYLKSYTYIKLVVSVLMDFIAYFFNFWTI 74


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 199 CPPHCPWHMY 228
           C P+ PWH +
Sbjct: 481 CDPYTPWHTF 490


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,527
Number of Sequences: 336
Number of extensions: 2422
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)