Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0018.Seq
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 48 3e-06
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 46 1e-05
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 45 2e-05
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 44 6e-05
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 43 8e-05
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 42 1e-04
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 41 4e-04
08_01_0605 + 5317079-5318446 29 1.4
09_04_0641 + 19172370-19172459,19172539-19172680,19172951-191730... 29 1.8
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513... 27 4.1
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439... 27 4.1
08_02_1339 + 26252609-26252925,26253025-26253227,26253379-262535... 27 5.5
01_06_0806 - 32123513-32123905 27 5.5
12_02_1164 + 26620779-26621087 26 9.5
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 26 9.5
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 48.0 bits (109), Expect = 3e-06
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = -3
Query: 244 LFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKISDDIKNE 65
++HY G C +G+VVD +V+G+ LRV+D ST + N A +M+ + I++E
Sbjct: 523 IWHYHGGCHVGAVVDDDYRVFGVQGLRVIDSSTFKYSPGTNPQATVMMLGRYMGVKIQSE 582
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = -3
Query: 244 LFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKISDDIKNE 65
++HY G C + VVD++ +V G+D LRV+D ST N A +M+ + I+NE
Sbjct: 520 IWHYHGGCQVNRVVDAEYRVIGVDALRVIDGSTFNASPGTNPQATVMMLGRYMGVKIQNE 579
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 45.2 bits (102), Expect = 2e-05
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = -3
Query: 244 LFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKISDDIKNE 65
++HY G C +G+VVD +V G+ LRVVD ST + N A +M+ + I+ E
Sbjct: 522 IWHYHGGCHVGAVVDQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMMLGRYMGLKIQKE 581
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 43.6 bits (98), Expect = 6e-05
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -3
Query: 256 QTVH-LFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEKISD 80
QTV L+HY G C GSVVD +V+ + LRVVD ST N A +MM I
Sbjct: 511 QTVATLWHYHGGCVAGSVVDRDFRVFRVRALRVVDGSTFRETPGTNPQATIMMMGRYIGQ 570
Query: 79 DIKNE 65
+ +E
Sbjct: 571 KMIDE 575
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 43.2 bits (97), Expect = 8e-05
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = -3
Query: 250 VHLFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMM 98
V ++HY G C +G VVD + +V G+ LRV+D ST+ N A +MM
Sbjct: 530 VTIWHYHGGCHVGKVVDQQYRVIGVSGLRVIDGSTLFRSPGTNPQATVMMM 580
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 42.3 bits (95), Expect = 1e-04
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = -3
Query: 277 LEVLHQVQTVHLFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMM 98
LE + + ++HY G C +G VVD + +V G+ +RVVD ST N A +MM
Sbjct: 507 LEQFCRDTVITIWHYHGGCHVGKVVDQQHRVLGVSGVRVVDGSTFSRSPGTNPQATVMMM 566
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 40.7 bits (91), Expect = 4e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -3
Query: 244 LFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMM 98
++HY G C +G VVD +V GI+ LRV+D ST N A +M+
Sbjct: 513 IWHYHGGCQVGRVVDRDYRVLGIEALRVIDGSTFNASPGTNPQATVMML 561
>08_01_0605 + 5317079-5318446
Length = 455
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 102 IMPAAKVLALTIKGMVLTSTTRRLSIPYTFILLS 203
+MP K+L LT+ G+VL++ ++ TF LLS
Sbjct: 24 VMPLMKLLCLTVIGLVLSNPRTQIIPKATFKLLS 57
>09_04_0641 +
19172370-19172459,19172539-19172680,19172951-19173039,
19173096-19173806
Length = 343
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 157 RQPGGYLYRTLSFYCPPHCPWHMY---RSNGIGGRSGLDVT-LPIILTTD-VHLTAFFQA 321
R P G Y + +C PH PW ++ + G G +D+T P L T +H F +
Sbjct: 234 RSPSGRRYDAV-VHCAPHLPWQVFDRVLAEGDTGGVVVDITPSPAALATALLHRVTFSKK 292
Query: 322 GISYFRF 342
++ F F
Sbjct: 293 RLTPFMF 299
>06_03_0613 +
22748223-22749513,22750046-22750179,22751066-22751309,
22751401-22751609,22751691-22751740,22751933-22752053,
22752138-22752383
Length = 764
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -3
Query: 268 LHQVQTVHLFHYSGTCAMGSVVDSKMKVYGIDNL 167
LH++Q + + + +G C G+V + ++Y + +L
Sbjct: 136 LHRLQALRVLNLTGNCLYGAVPEHFSRMYSLQSL 169
>04_04_1158 -
31342934-31343272,31343508-31343658,31343745-31343976,
31344173-31344284,31344572-31344690,31344772-31344936,
31345049-31345247,31345351-31345733,31345838-31345902,
31346003-31346047,31346402-31346467,31346707-31346778,
31346907-31346981,31347086-31347157,31347255-31347326,
31347954-31348022,31348109-31348180,31348280-31348351,
31348756-31348827,31349295-31349366,31349528-31349711,
31350082-31350220
Length = 948
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -3
Query: 235 YSGTCAMGSVVDSKMKVYGIDNLRVVDV----STMPFIVRANTLAAGIMMAEKISDDI 74
+ G GS+ + K+ + NLR+ D+ S++ FI +L+ ++ KISD++
Sbjct: 229 FQGNSFQGSIPATLSKLVQLTNLRIGDIENGSSSLAFISNMTSLSILVLRNCKISDNL 286
>08_02_1339 +
26252609-26252925,26253025-26253227,26253379-26253536,
26253802-26253870,26253980-26254461,26254558-26254766,
26254865-26254901,26254991-26255075,26255186-26255269,
26255344-26255412,26255520-26255663
Length = 618
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 285 EDYWKCYIKSRPSTYSITPV 226
E WKC+I+S T+ I PV
Sbjct: 388 EFIWKCFIRSTADTHQIYPV 407
>01_06_0806 - 32123513-32123905
Length = 130
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 41 KTFLSKGIFIFNVVTYLFRHHYASRQGI--GSDDKRHGA 151
+ LS F F VT LF H Y +R I +D RHG+
Sbjct: 9 RILLSTPAFFFLFVTPLFPHPYQARYAIPTNNDLPRHGS 47
>12_02_1164 + 26620779-26621087
Length = 102
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 202 PPHCPWHMYRSNGIGGRSG 258
P CPWH Y S G GR G
Sbjct: 8 PRRCPWHRYAS-GPRGRCG 25
>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -1
Query: 291 SSEDYWKCYIKSRPSTYSITPVHVPWAVWW 202
S DYW C K + P HV ++W
Sbjct: 1159 SCVDYWSCAGKPPRPVTDMPPAHVDGTLYW 1188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,569,157
Number of Sequences: 37544
Number of extensions: 264017
Number of successful extensions: 627
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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