Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0018.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)           54   3e-08
SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  
SB_48732| Best HMM Match : Cys_knot (HMM E-Value=7.3)                  26   9.8  
SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.8  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)
          Length = 79

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
 Frame = -3

Query: 244 LFHYSGTCAMG----SVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEK 89
           +FH  GTC MG    +VVD K++V G+  LR+VD S MP I   NT +  IM+AEK
Sbjct: 16  IFHPVGTCKMGQDEDAVVDHKLRVRGLSGLRIVDASIMPTITSGNTNSPTIMIAEK 71


>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 238 HYSGTCAMGSVVDSKMKVYGIDNLRVVD 155
           HY+ TC   S+V   +  + + N++ VD
Sbjct: 114 HYAATCEFTSIVQQLLDAHALTNIKDVD 141


>SB_48732| Best HMM Match : Cys_knot (HMM E-Value=7.3)
          Length = 122

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 264 CNTSNNPHY*RPSHRILPSRDQLF 335
           C+T++N  Y + SHR LP R Q +
Sbjct: 14  CHTTHNGTYIKRSHRRLPYRPQWY 37


>SB_5695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 281 IIGSVTSSPDRPPIPLLRYM 222
           +IG+V  SP+ P +P+L Y+
Sbjct: 289 VIGAVYHSPNDPDLPMLNYL 308


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 281 IIGSVTSSPDRPPIPLLRYM 222
           +IG+V  SP+ P +P+L Y+
Sbjct: 600 VIGAVYHSPNDPDLPMLNYL 619


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,940,367
Number of Sequences: 59808
Number of extensions: 275703
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)